Mercurial > repos > galaxy-australia > hifiadapterfilt
comparison README.md @ 0:bbc2060caa0e draft
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
| author | galaxy-australia |
|---|---|
| date | Mon, 11 Jul 2022 03:09:58 +0000 |
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| children |
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| -1:000000000000 | 0:bbc2060caa0e |
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| 1 # HiFiAdapterFilt | |
| 2 Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz). | |
| 3 | |
| 4 # Dependencies | |
| 5 - BamTools | |
| 6 - BLAST+ | |
| 7 | |
| 8 # Installation | |
| 9 Currently only tested on Ubuntu | |
| 10 | |
| 11 # Docker | |
| 12 - HiFiAdapterFilt Docker is available on https://hub.docker.com/r/dmolik/pbadapterfilt | |
| 13 | |
| 14 ``` | |
| 15 docker pull dmolik/pbadapterfilt | |
| 16 docker run -t -d -v /hifireads_data_directory_on_host_machine/:/home/genomics/HiFiAdapterFilt-master/ubuntu --name hifiadapterfilt dmolik/pbadapterfilt | |
| 17 docker exec -it <container_id> /bin/bash | |
| 18 | |
| 19 ``` | |
| 20 | |
| 21 See [official documentation](https://github.com/sheinasim/HiFiAdapterFilt) for more details. |