Mercurial > repos > galaxy-australia > hifiadapterfilt

comparison macros.xml @ 0:bbc2060caa0e draft

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"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
author galaxy-australia
date Mon, 11 Jul 2022 03:09:58 +0000
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children 03acc0e3772e
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-1:000000000000 0:bbc2060caa0e
1 <macros>
2 <token name="@TOOL_VERSION@">2.0.0</token>
3 <token name="@VERSION_SUFFIX@">0</token>
4 <token name="@PROFILE@">21.05</token>
5 <token name="@DIGEST@">99b5e479baee5ffe01c676dd3d7180b0d3eb94af08db0f2ceb3641bef3ebbaa4</token>
6 <xml name="requirements">
7 <requirements>
8 <container type="docker">dmolik/pbadapterfilt:latest</container>
9 </requirements>
10 </xml>
11 <xml name="stdio">
12 <stdio>
13 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
14 <exit_code range="1:" level="fatal" description="Error" />
15 </stdio>
16 </xml>
17 <token name="@CLEAN_EXT@">
18 <![CDATA[
19 #from os.path import splitext
20 #import re
21 #def clean_ext($identifier)
22 #while $identifier.endswith(('.fq','.fastq', '.fastq.gz','.bam'))
23 #set $identifier = splitext($identifier)[0]
24 #end while
25 $identifier#slurp
26 #end def
27 ]]>
28 </token>
29 </macros>