Mercurial > repos > galaxy-australia > hifiadapterfilt

diff macros.xml @ 2:03acc0e3772e draft default tip

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"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit db087ed782a52833a02df3bfef0793b4dd909081"
author galaxy-australia
date Wed, 16 Nov 2022 06:19:15 +0000
parents bbc2060caa0e
children
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line diff
--- a/macros.xml	Wed Sep 14 02:37:39 2022 +0000
+++ b/macros.xml	Wed Nov 16 06:19:15 2022 +0000
@@ -14,16 +14,4 @@
          <exit_code range="1:"  level="fatal" description="Error" />
       </stdio>
     </xml>	
-    <token name="@CLEAN_EXT@">
-        <![CDATA[
-        #from os.path import splitext
-        #import re
-        #def clean_ext($identifier)
-            #while $identifier.endswith(('.fq','.fastq', '.fastq.gz','.bam'))
-                #set $identifier = splitext($identifier)[0]
-            #end while
-$identifier#slurp
-        #end def
-        ]]>
-    </token>
 </macros>