Mercurial > repos > galaxy-australia > hifiadapterfilt
diff hifiadapterfilt.xml @ 1:41f5b4a4eac0 draft
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 8b04bda034e2e05436e15c066fde316098714aa3"
author | galaxy-australia |
---|---|
date | Wed, 14 Sep 2022 02:37:39 +0000 |
parents | bbc2060caa0e |
children | 03acc0e3772e |
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--- a/hifiadapterfilt.xml Mon Jul 11 03:09:58 2022 +0000 +++ b/hifiadapterfilt.xml Wed Sep 14 02:37:39 2022 +0000 @@ -2,7 +2,7 @@ <description>Remove CCS reads with remnant PacBio adapter sequences</description> <xrefs> <xref type='bio.tools'>hifiadapterfilt</xref> - </xrefs> + </xrefs> <macros> <import>macros.xml</import> </macros> @@ -68,7 +68,7 @@ **Input** -- input file - FASTQ and BAM. Also, gipped versions of FASTQ. +- input file - FASTQ and BAM. Also, gzipped versions of FASTQ. **Example:** @@ -77,21 +77,21 @@ **Output** - {prefix}.contaminant.blastout (Output of BLAST search) -- {prefix}.blocklist (Headers of PB adapter contaminated reads to be removed) -- {prefix}.filt.fastq.gz (Fastq reads free of PB adapter sequence ready for assembly) -- {prefix}.stats (File with simple math on number of reads removed, etc) +- {prefix}.blocklist (Headers of PacBio adapter contaminated reads to be removed) +- {prefix}.filt.fastq.gz (Fastq reads free of PacBio adapter sequence ready for assembly) +- {prefix}.stats (File with simple statistics for the number of reads removed, etc) .. class:: infomark **Contributor** -Galaxy Australia is the contributor wrapping the HiFiadapterFilt `Github <https://github.com/usegalaxy-au/tools-au>`_. - +Galaxy Australia wrapped the HiFiadapterFilt: the original software is available in this Github repository `Github <https://github.com/sheinasim/HiFiAdapterFilt>`_. + **References** -More information are available on `Github <https://github.com/sheinasim/HiFiAdapterFilt>`_. ]]></help> + <citations> <citation type="doi">DOI: 10.1186/s12864-022-08375-1</citation> </citations>