Mercurial > repos > galaxy-australia > hifiadapterfilt

diff README.md @ 0:bbc2060caa0e draft

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"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
author galaxy-australia
date Mon, 11 Jul 2022 03:09:58 +0000
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+# HiFiAdapterFilt
+Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
+
+# Dependencies
+- BamTools
+- BLAST+
+
+# Installation
+Currently only tested on Ubuntu
+
+# Docker
+- HiFiAdapterFilt Docker is available on https://hub.docker.com/r/dmolik/pbadapterfilt
+
+```
+docker pull dmolik/pbadapterfilt
+docker run -t -d -v /hifireads_data_directory_on_host_machine/:/home/genomics/HiFiAdapterFilt-master/ubuntu --name hifiadapterfilt dmolik/pbadapterfilt
+docker exec -it <container_id> /bin/bash
+
+```
+
+See [official documentation](https://github.com/sheinasim/HiFiAdapterFilt) for more details.