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comparison macros.xml @ 1:c7fda6e88567 draft

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planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/kmc commit 3be367228b531c346c10700f07d57ae44394be36-dirty
author galaxy-australia
date Tue, 01 Oct 2024 04:06:26 +0000
parents ca2743037241
children c97f8a687258
comparison
equal deleted inserted replaced
0:ca2743037241 1:c7fda6e88567
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">3.2.1</token> 2 <token name="@TOOL_VERSION@">3.2.1</token>
3 <token name="@VERSION_SUFFIX@">0</token> 3 <token name="@VERSION_SUFFIX@">1</token>
4 <token name="@PROFILE@">22.05</token>
4 <xml name="requirements"> 5 <xml name="requirements">
5 <requirements> 6 <requirements>
6 <requirement type="package" version="@TOOL_VERSION@">kmc</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">kmc</requirement>
7 </requirements> 8 </requirements>
8 </xml> 9 </xml>
16 <version_command><![CDATA[ 17 <version_command><![CDATA[
17 kmc --version 2>&1 | head -1 18 kmc --version 2>&1 | head -1
18 ]]></version_command> 19 ]]></version_command>
19 </xml> 20 </xml>
20 <xml name="macro_input"> 21 <xml name="macro_input">
21 <param name="input_file" type="data" format="fasta,fastq,fasta.gz,fastqsanger,fastq.gz,bam" label="Sequence file"/> 22 <conditional name="data_type">
23 <param name="select" type="select" label="File input type for KMC">
24 <option value="individual">In individual datasets</option>
25 <option value="collection">In collection</option>
26 </param>
27 <when value="individual">
28 <param name="individual_file" type="data" format="fasta,fastq,fasta.gz,fastqsanger,fastqsanger.gz,fastq.gz,bam" multiple="true" label="FASTQ/A file"/>
29 </when>
30 <when value="collection">
31 <param name="collection_file" type="data_collection" collection_type="list" format="fasta,fastq,fasta.gz,fastqsanger,fastqsanger.gz,fastq.gz,bam" label="A list of FASTQ/A files"/>
32 </when>
33 </conditional>
22 </xml> 34 </xml>
23 <xml name="general_option"> 35 <xml name="general_option">
24 <param argument="exclude_length" type="integer" value="2" label="exclude k-mers occurring less than [value] times (default: 2)"/> 36 <param argument="exclude_length" type="integer" value="2" label="exclude k-mers occurring less than [value] times (default: 2)"/>
25 <param argument="exclude_kmer_occurence" type="integer" value="1000000000" label="exclude k-mers occurring more of than [value] times (default: 1e9)"/> 37 <param argument="exclude_kmer_occurence" type="integer" value="1000000000" label="exclude k-mers occurring more of than [value] times (default: 1e9)"/>
26 </xml> 38 </xml>