Mercurial > repos > galaxy-australia > pbccs

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author galaxy-australia
date Fri, 18 Mar 2022 02:10:52 +0000
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ccs combines multiple subreads of the same SMRTbell molecule using a statistical model to produce one highly accurate consensus sequence, also called a HiFi read, along with base quality values. This tool powers the Circular Consensus Sequencing workflow in SMRT Link.

To process the old version of bam generated by the RSII chemistry of PacBio. This Galaxy wrapper is using ccs version 3.4.1.  

The latest version of ccs (pbccs) is 6.2.0 and can be found on [conda](https://anaconda.org/bioconda/pbccs) 

See [doc](https://ccs.how/) for more details.