Mercurial > repos > galaxy-australia > smudgeplot
view test-data/my_genome_warnings.txt @ 6:015283de3004 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 4b95b96461684de086fe7e8086af9385f3ed7930
author | iuc |
---|---|
date | Wed, 20 Dec 2023 18:03:16 +0000 |
parents | 24e471d13fe9 |
children |
line wrap: on
line source
###################### ## INPUT PROCESSING ## ###################### ############# ## SUMMARY ## ############# detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 35 detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 30 detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 25 detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 20 !! Warning, your coverage filter on the lower end (L = 23 ) is higher than half of the 1n coverage estimate ( 1n / 2 = 12.5 If the real 1n coverage is half of your estimate you would not picked it up due to the filtering. If you have sufficient coverage, consider reruning the analysis with lower L (something like (1n / 2) - 5) One good way for verificaiton would be to compare it to GenomeScope estimate of haploid coverage ########## ## PLOT ## ##########