Mercurial > repos > galaxyp > abrf2017_workshop
annotate Galaxy-Workflow-ABRF_2017_Taxonomy_Comparison_Workflow.ga @ 1:338a6d724774 draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit e81bd1614788b8bfe8752c4a4279abdcc34e9777
author | galaxyp |
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date | Thu, 16 Mar 2017 08:45:23 -0400 |
parents | eb71034189fb |
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rev | line source |
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0
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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1 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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changeset
|
2 "a_galaxy_workflow": "true", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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3 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
4 "format-version": "0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
5 "name": "ABRF 2017:Taxonomy Comparison Workflow", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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6 "steps": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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7 "0": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
8 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
9 "content_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
10 "id": 0, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
11 "input_connections": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
12 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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13 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
14 "description": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
15 "name": "PSM Report (Bering Strait)" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
16 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
17 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
18 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
19 "name": "Input dataset", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
20 "outputs": [], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
21 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
22 "left": 296, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
23 "top": 186 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
24 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
25 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
26 "tool_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
27 "tool_state": "{\"name\": \"PSM Report (Bering Strait)\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
28 "tool_version": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
29 "type": "data_input", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
30 "uuid": "c404eaed-7c90-4b48-82c4-9083bdb6db29", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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31 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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32 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
33 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
34 "output_name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
35 "uuid": "0bfee776-11e1-4553-a7ee-25fd0c628891" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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36 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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changeset
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37 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
38 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
39 "1": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
40 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
41 "content_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
42 "id": 1, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
43 "input_connections": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
44 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
45 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
46 "description": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
47 "name": "PSM Report (Chukchi Sea)" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
48 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
49 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
50 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
51 "name": "Input dataset", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
52 "outputs": [], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
53 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
54 "left": 352, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
55 "top": 596.5 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
56 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
57 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
58 "tool_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
59 "tool_state": "{\"name\": \"PSM Report (Chukchi Sea)\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
60 "tool_version": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
61 "type": "data_input", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
62 "uuid": "c6e42b4c-4116-48eb-92a2-bebdbceaba1d", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
63 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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64 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
65 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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66 "output_name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
67 "uuid": "0d4f355a-1f05-49a9-a5a3-2f58fc25ca32" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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68 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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69 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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70 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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71 "2": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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72 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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changeset
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73 "content_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/query_tabular/query_tabular/2.0.0", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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74 "id": 2, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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75 "input_connections": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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76 "tables_0|table": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
77 "id": 0, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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78 "output_name": "output" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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79 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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80 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
81 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
82 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
83 "description": "runtime parameter for tool Query Tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
84 "name": "add_to_database" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
85 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
86 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
87 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
88 "name": "Query Tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
89 "outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
90 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
91 "name": "sqlitedb", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
92 "type": "sqlite" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
93 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
94 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
95 "name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
96 "type": "tabular" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
97 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
98 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
99 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
100 "left": 453, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
101 "top": 335 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
102 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
103 "post_job_actions": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
104 "HideDatasetActionsqlitedb": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
105 "action_arguments": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
106 "action_type": "HideDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
107 "output_name": "sqlitedb" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
108 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
109 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
110 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
changeset
|
111 "tool_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/query_tabular/query_tabular/2.0.0", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
112 "tool_shed_repository": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
113 "changeset_revision": "e84d1c3bf4fe", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
114 "name": "query_tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
115 "owner": "jjohnson", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
116 "tool_shed": "toolshed.g2.bx.psu.edu" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
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|
117 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
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|
118 "tool_state": "{\"tables\": \"[{\\\"tbl_opts\\\": {\\\"load_named_columns\\\": \\\"true\\\", \\\"pkey_autoincr\\\": \\\"\\\", \\\"table_name\\\": \\\"psm\\\", \\\"col_names\\\": \\\"id,,sequence,,,,,,,,,,,,,,,,,,,,confidence,validation\\\", \\\"indexes\\\": []}, \\\"__index__\\\": 0, \\\"input_opts\\\": {\\\"linefilters\\\": [{\\\"filter\\\": {\\\"regex_action\\\": \\\"include_match\\\", \\\"regex_pattern\\\": \\\"^\\\\\\\\d\\\", \\\"__current_case__\\\": 2, \\\"filter_type\\\": \\\"regex\\\"}, \\\"__index__\\\": 0}]}, \\\"table\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}]\", \"save_db\": \"\\\"true\\\"\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"no_header\": \"\\\"true\\\"\", \"sqlquery\": \"\\\"SELECT distinct sequence \\\\nFROM psm \\\\nWHERE validation IS NOT 'Confident' AND confidence >= 95 \\\\nORDER BY sequence\\\"\", \"add_to_database\": \"{\\\"withdb\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\", \"workdb\": \"\\\"workdb.sqlite\\\"\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
119 "tool_version": "2.0.0", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
120 "type": "tool", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
121 "uuid": "90d1308d-cd0a-4dc7-8da8-eb1a311e3825", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
122 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
123 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
124 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
125 "output_name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
126 "uuid": "cb6d774d-7930-4c42-b3dd-7e523acc58a2" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
127 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
128 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
129 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
130 "3": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
131 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
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|
132 "content_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/query_tabular/query_tabular/2.0.0", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
133 "id": 3, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
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|
134 "input_connections": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
135 "tables_0|table": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
136 "id": 1, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
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|
137 "output_name": "output" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
138 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
139 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
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|
140 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
141 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
142 "description": "runtime parameter for tool Query Tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
143 "name": "add_to_database" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
144 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
145 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
146 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
147 "name": "Query Tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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|
148 "outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
149 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
150 "name": "sqlitedb", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
151 "type": "sqlite" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
152 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
153 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
154 "name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
155 "type": "tabular" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
156 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
157 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
158 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
159 "left": 562, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
160 "top": 646.5 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
161 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
162 "post_job_actions": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
163 "HideDatasetActionsqlitedb": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
164 "action_arguments": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
165 "action_type": "HideDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
changeset
|
166 "output_name": "sqlitedb" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
167 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
168 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
169 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
changeset
|
170 "tool_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/query_tabular/query_tabular/2.0.0", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
171 "tool_shed_repository": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
172 "changeset_revision": "e84d1c3bf4fe", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
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|
173 "name": "query_tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
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|
174 "owner": "jjohnson", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
175 "tool_shed": "toolshed.g2.bx.psu.edu" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
176 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
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|
177 "tool_state": "{\"tables\": \"[{\\\"tbl_opts\\\": {\\\"load_named_columns\\\": \\\"true\\\", \\\"pkey_autoincr\\\": \\\"\\\", \\\"table_name\\\": \\\"psm\\\", \\\"col_names\\\": \\\"id,,sequence,,,,,,,,,,,,,,,,,,,,confidence,validation\\\", \\\"indexes\\\": []}, \\\"__index__\\\": 0, \\\"input_opts\\\": {\\\"linefilters\\\": [{\\\"filter\\\": {\\\"regex_action\\\": \\\"include_match\\\", \\\"regex_pattern\\\": \\\"^\\\\\\\\d\\\", \\\"__current_case__\\\": 2, \\\"filter_type\\\": \\\"regex\\\"}, \\\"__index__\\\": 0}]}, \\\"table\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}]\", \"save_db\": \"\\\"true\\\"\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"no_header\": \"\\\"false\\\"\", \"sqlquery\": \"\\\"SELECT distinct sequence \\\\nFROM psm \\\\nWHERE validation IS NOT 'Confident' AND confidence >= 95 \\\\nORDER BY sequence\\\"\", \"add_to_database\": \"{\\\"withdb\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\", \"workdb\": \"\\\"workdb.sqlite\\\"\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
178 "tool_version": "2.0.0", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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179 "type": "tool", |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
180 "uuid": "f512a71f-f718-4eca-9879-95c876274d57", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
181 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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changeset
|
182 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
183 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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|
184 "output_name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
185 "uuid": "b2c1c6ac-672f-471f-8f81-1e9d7aaf1b18" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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|
186 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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|
187 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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|
188 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
189 "4": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
190 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
191 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/2.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
192 "id": 4, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
193 "input_connections": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
194 "peptide_src|input_tsv": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
195 "id": 2, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
196 "output_name": "output" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
197 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
198 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
199 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
200 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
201 "description": "runtime parameter for tool Unipept", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
202 "name": "peptide_src" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
203 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
204 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
205 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
206 "name": "Unipept", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
207 "outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
208 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
209 "name": "output_json", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
210 "type": "d3_hierarchy" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
211 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
212 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
213 "name": "output_tsv", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
214 "type": "tabular" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
215 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
216 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
217 "name": "output_csv", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
218 "type": "csv" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
219 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
220 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
221 "name": "output_unmatched", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
222 "type": "tabular" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
223 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
224 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
225 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
226 "left": 754.5, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
227 "top": 327.5 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
228 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
229 "post_job_actions": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
230 "HideDatasetActionoutput_csv": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
231 "action_arguments": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
232 "action_type": "HideDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
233 "output_name": "output_csv" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
234 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
235 "HideDatasetActionoutput_unmatched": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
236 "action_arguments": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
237 "action_type": "HideDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
238 "output_name": "output_unmatched" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
239 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
240 "RenameDatasetActionoutput_json": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
241 "action_arguments": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
242 "newname": "Unipept: TAXONOMY Phylogenetic Tree (Bering Strait)" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
243 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
244 "action_type": "RenameDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
245 "output_name": "output_json" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
246 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
247 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
248 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
249 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/2.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
250 "tool_shed_repository": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
251 "changeset_revision": "34758ab8aaa4", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
252 "name": "unipept", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
253 "owner": "galaxyp", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
254 "tool_shed": "toolshed.g2.bx.psu.edu" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
255 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
256 "tool_state": "{\"__page__\": 0, \"outputs\": \"[\\\"tsv\\\", \\\"json\\\"]\", \"__rerun_remap_job_id__\": null, \"peptide_src\": \"{\\\"column\\\": \\\"1\\\", \\\"fmt\\\": \\\"tabular\\\", \\\"input_tsv\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1}\", \"strict\": \"\\\"false\\\"\", \"unipept\": \"{\\\"allfields\\\": \\\"false\\\", \\\"extra\\\": \\\"false\\\", \\\"api\\\": \\\"pept2lca\\\", \\\"names\\\": \\\"true\\\", \\\"__current_case__\\\": 0, \\\"equate_il\\\": \\\"true\\\"}\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
257 "tool_version": "2.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
258 "type": "tool", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
259 "uuid": "829dee5e-7a29-4dce-857a-2c73f5967fc6", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
260 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
261 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
262 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
263 "output_name": "output_tsv", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
264 "uuid": "3b30dfdc-5778-4862-8d14-819c4a1c81a5" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
265 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
266 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
267 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
268 "output_name": "output_json", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
269 "uuid": "d1d13d17-c7b2-4ebc-a4e6-822b05a99eea" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
270 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
271 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
272 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
273 "5": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
274 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
275 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/2.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
276 "id": 5, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
277 "input_connections": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
278 "peptide_src|input_tsv": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
279 "id": 3, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
280 "output_name": "output" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
281 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
282 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
283 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
284 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
285 "description": "runtime parameter for tool Unipept", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
286 "name": "peptide_src" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
287 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
288 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
289 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
290 "name": "Unipept", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
291 "outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
292 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
293 "name": "output_json", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
294 "type": "d3_hierarchy" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
295 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
296 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
297 "name": "output_tsv", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
298 "type": "tabular" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
299 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
300 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
301 "name": "output_csv", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
302 "type": "csv" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
303 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
304 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
305 "name": "output_unmatched", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
306 "type": "tabular" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
307 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
308 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
309 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
310 "left": 869, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
311 "top": 628.5 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
312 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
313 "post_job_actions": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
314 "HideDatasetActionoutput_csv": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
315 "action_arguments": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
316 "action_type": "HideDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
317 "output_name": "output_csv" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
318 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
319 "HideDatasetActionoutput_unmatched": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
320 "action_arguments": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
321 "action_type": "HideDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
322 "output_name": "output_unmatched" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
323 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
324 "RenameDatasetActionoutput_json": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
325 "action_arguments": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
326 "newname": "Unipept: TAXONOMY Phylogenetic Tree (Chukchi Sea)" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
327 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
328 "action_type": "RenameDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
329 "output_name": "output_json" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
330 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
331 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
332 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
333 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/2.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
334 "tool_shed_repository": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
335 "changeset_revision": "34758ab8aaa4", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
336 "name": "unipept", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
337 "owner": "galaxyp", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
338 "tool_shed": "toolshed.g2.bx.psu.edu" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
339 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
340 "tool_state": "{\"__page__\": 0, \"outputs\": \"[\\\"tsv\\\", \\\"json\\\"]\", \"__rerun_remap_job_id__\": null, \"peptide_src\": \"{\\\"column\\\": \\\"1\\\", \\\"fmt\\\": \\\"tabular\\\", \\\"input_tsv\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1}\", \"strict\": \"\\\"false\\\"\", \"unipept\": \"{\\\"allfields\\\": \\\"false\\\", \\\"extra\\\": \\\"false\\\", \\\"api\\\": \\\"pept2lca\\\", \\\"names\\\": \\\"true\\\", \\\"__current_case__\\\": 0, \\\"equate_il\\\": \\\"true\\\"}\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
341 "tool_version": "2.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
342 "type": "tool", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
343 "uuid": "a9912f29-258c-4327-9b45-67cccb557cf3", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
344 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
345 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
346 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
347 "output_name": "output_tsv", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
348 "uuid": "cc2030a9-5328-445a-bc90-5ce555b57275" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
349 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
350 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
351 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
352 "output_name": "output_json", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
353 "uuid": "d1495e86-d619-4bf5-b573-b0afcb5aebbc" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
354 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
355 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
356 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
357 "6": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
358 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
359 "content_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/query_tabular/query_tabular/2.0.0", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
360 "id": 6, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
361 "input_connections": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
362 "tables_0|table": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
363 "id": 0, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
364 "output_name": "output" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
365 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
366 "tables_1|table": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
367 "id": 4, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
368 "output_name": "output_tsv" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
369 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
370 "tables_2|table": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
371 "id": 1, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
372 "output_name": "output" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
373 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
374 "tables_3|table": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
375 "id": 5, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
376 "output_name": "output_tsv" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
377 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
378 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
379 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
380 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
381 "description": "runtime parameter for tool Query Tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
382 "name": "add_to_database" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
383 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
384 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
385 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
386 "name": "Query Tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
387 "outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
388 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
389 "name": "sqlitedb", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
390 "type": "sqlite" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
391 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
392 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
393 "name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
394 "type": "tabular" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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395 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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396 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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397 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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398 "left": 1342, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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399 "top": 298.5 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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400 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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401 "post_job_actions": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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402 "HideDatasetActionsqlitedb": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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403 "action_arguments": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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404 "action_type": "HideDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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405 "output_name": "sqlitedb" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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406 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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407 "RenameDatasetActionoutput": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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408 "action_arguments": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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409 "newname": "Unipept: TAXONOMY GENUS PSMs Peptides (Bering Strait and Chukchi Sea)" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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410 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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411 "action_type": "RenameDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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412 "output_name": "output" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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413 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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414 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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415 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
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416 "tool_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/query_tabular/query_tabular/2.0.0", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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417 "tool_shed_repository": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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418 "changeset_revision": "e84d1c3bf4fe", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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419 "name": "query_tabular", |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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420 "owner": "jjohnson", |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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421 "tool_shed": "toolshed.g2.bx.psu.edu" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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422 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
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423 "tool_state": "{\"tables\": \"[{\\\"tbl_opts\\\": {\\\"load_named_columns\\\": \\\"true\\\", \\\"pkey_autoincr\\\": \\\"\\\", \\\"table_name\\\": \\\"bering_psm\\\", \\\"col_names\\\": \\\"id,,sequence,,,,,,,,,,,,,,,,,,,,confidence,validation\\\", \\\"indexes\\\": []}, \\\"__index__\\\": 0, \\\"input_opts\\\": {\\\"linefilters\\\": [{\\\"filter\\\": {\\\"regex_action\\\": \\\"include_match\\\", \\\"regex_pattern\\\": \\\"^\\\\\\\\d\\\", \\\"__current_case__\\\": 2, \\\"filter_type\\\": \\\"regex\\\"}, \\\"__index__\\\": 0}]}, \\\"table\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}, {\\\"tbl_opts\\\": {\\\"load_named_columns\\\": \\\"true\\\", \\\"pkey_autoincr\\\": \\\"\\\", \\\"table_name\\\": \\\"bering_lca\\\", \\\"col_names\\\": \\\"peptide,,,,,,,,,,,,,,,,,,,,,genus\\\", \\\"indexes\\\": []}, \\\"__index__\\\": 1, \\\"input_opts\\\": {\\\"linefilters\\\": [{\\\"filter\\\": {\\\"comment_char\\\": \\\"#\\\", \\\"__current_case__\\\": 1, \\\"filter_type\\\": \\\"comment\\\"}, \\\"__index__\\\": 0}]}, \\\"table\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}, {\\\"tbl_opts\\\": {\\\"load_named_columns\\\": \\\"true\\\", \\\"pkey_autoincr\\\": \\\"\\\", \\\"table_name\\\": \\\"chukchi_psm\\\", \\\"col_names\\\": \\\"id,,sequence,,,,,,,,,,,,,,,,,,,,confidence,validation\\\", \\\"indexes\\\": []}, \\\"__index__\\\": 2, \\\"input_opts\\\": {\\\"linefilters\\\": [{\\\"filter\\\": {\\\"regex_action\\\": \\\"include_match\\\", \\\"regex_pattern\\\": \\\"^\\\\\\\\d\\\", \\\"__current_case__\\\": 2, \\\"filter_type\\\": \\\"regex\\\"}, \\\"__index__\\\": 0}]}, \\\"table\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}, {\\\"tbl_opts\\\": {\\\"load_named_columns\\\": \\\"true\\\", \\\"pkey_autoincr\\\": \\\"\\\", \\\"table_name\\\": \\\"chukchi_lca\\\", \\\"col_names\\\": \\\"peptide,,,,,,,,,,,,,,,,,,,,,genus\\\", \\\"indexes\\\": []}, \\\"__index__\\\": 3, \\\"input_opts\\\": {\\\"linefilters\\\": [{\\\"filter\\\": {\\\"comment_char\\\": \\\"#\\\", \\\"__current_case__\\\": 1, \\\"filter_type\\\": \\\"comment\\\"}, \\\"__index__\\\": 0}]}, \\\"table\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}]\", \"save_db\": \"\\\"true\\\"\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"no_header\": \"\\\"false\\\"\", \"sqlquery\": \"\\\"SELECT taxon.genus, bering.psms as \\\\\\\"BeringStrait_PSMs\\\\\\\", chukchi.psms as \\\\\\\"ChukchiSea_PSMs\\\\\\\",\\\\nbering.peptides as \\\\\\\"BeringStrait_Peptides\\\\\\\", chukchi.peptides as \\\\\\\"ChukchiSea_Peptides\\\\\\\"\\\\nFROM\\\\n (SELECT distinct genus FROM bering_lca WHERE genus IS NOT NULL\\\\n UNION\\\\n SELECT distinct genus FROM chukchi_lca WHERE genus IS NOT NULL) as taxon\\\\n LEFT OUTER JOIN\\\\n (SELECT bering_lca.genus,count(bering_psm.sequence) as \\\\\\\"psms\\\\\\\",count(distinct bering_psm.sequence) as \\\\\\\"peptides\\\\\\\"\\\\n FROM bering_psm LEFT JOIN bering_lca ON bering_psm.sequence = bering_lca.peptide\\\\n WHERE validation IS NOT 'Confident'\\\\n AND confidence >= 95\\\\n GROUP BY bering_lca.genus ) as bering\\\\n ON taxon.genus = bering.genus\\\\n LEFT OUTER JOIN\\\\n (SELECT chukchi_lca.genus,count(chukchi_psm.sequence) as \\\\\\\"psms\\\\\\\",count(distinct chukchi_psm.sequence) as \\\\\\\"peptides\\\\\\\"\\\\n FROM chukchi_psm LEFT JOIN chukchi_lca ON chukchi_psm.sequence = chukchi_lca.peptide\\\\n WHERE validation IS NOT 'Confident'\\\\n AND confidence >= 95\\\\n GROUP BY chukchi_lca.genus) as chukchi\\\\n ON taxon.genus = chukchi.genus\\\\nWHERE bering.psms IS NOT NULL OR chukchi.psms IS NOT NULL\\\\nORDER BY taxon.genus\\\\n\\\"\", \"add_to_database\": \"{\\\"withdb\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\", \"workdb\": \"\\\"workdb.sqlite\\\"\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
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424 "tool_version": "2.0.0", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
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425 "type": "tool", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
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426 "uuid": "c8b14d06-f3a3-46db-b3c6-01f5c50bc16e", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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427 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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428 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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429 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
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430 "output_name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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431 "uuid": "ea8853c6-d1e2-4c04-a795-4b1af5e50ff4" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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432 } |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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433 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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434 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
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435 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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436 "uuid": "8fac309b-4ea6-4c20-9e40-651b2346b3e8" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
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437 } |