Mercurial > repos > galaxyp > asms_tutorial_2016
changeset 0:05ab719b9b93 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 6671681f22de8443c29a6c5824f14175c66daffb-dirty
author | galaxyp |
---|---|
date | Fri, 13 May 2016 09:34:49 -0400 |
parents | |
children | 673718067538 |
files | PeptideShaker_PSM_REPORT_to_NOVEL_peptides.ga repository_dependencies.xml |
diffstat | 2 files changed, 1322 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/PeptideShaker_PSM_REPORT_to_NOVEL_peptides.ga Fri May 13 09:34:49 2016 -0400 @@ -0,0 +1,1312 @@ +{ + "a_galaxy_workflow": "true", + "annotation": "", + "format-version": "0.1", + "name": "ASMS 2016: Session 3: Workflow for PeptideShaker PSM REPORT to NOVEL peptides", + "steps": { + "0": { + "annotation": "", + "content_id": null, + "id": 0, + "input_connections": {}, + "inputs": [ + { + "description": "", + "name": "PSM REPORT from PeptideShaker Output" + } + ], + "label": null, + "name": "Input dataset", + "outputs": [], + "position": { + "left": 173.078125, + "top": 223.53125 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"name\": \"PSM REPORT from PeptideShaker Output\"}", + "tool_version": null, + "type": "data_input", + "uuid": "57ddf9d9-243a-494e-ab80-9e4e847b1bb3", + "workflow_outputs": [ + { + "label": null, + "output_name": "output", + "uuid": "b766949c-89c0-4596-90c9-5a7cc2e6ba9f" + } + ] + }, + "1": { + 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/repository_dependencies.xml Fri May 13 09:34:49 2016 -0400 @@ -0,0 +1,10 @@ +<?xml version="1.0"?> +<repositories description="This workflow requires a number of different repositories."> + <repository changeset_revision="0b4e36026794" name="tabular_to_fasta" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="de2db1bdfbf8" name="fasta_compute_length" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="c8cd0a03db49" name="fasta_filter_by_length" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="9ea374bb0350" name="regex_find_replace" owner="jjohnson" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="a51980bc0ffe" name="blast_plus_remote_blastp" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="5da5dcc5e13a" name="blastxml_to_tabular_selectable" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="626658afe4cb" name="column_maker" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> +</repositories>