Mercurial > repos > galaxyp > bed_to_protein_map

diff bed_to_protein_map.py @ 1:a7c58b43cbaa draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/bed_to_protein_map commit 2a470e2c775a7427aa530e058510e4dc7b6d8e80"
author galaxyp
date Tue, 07 Apr 2020 11:33:11 -0400
parents 024ed7b0ad93
children
line wrap: on
line diff
--- a/bed_to_protein_map.py	Thu Jan 04 16:29:38 2018 -0500
+++ b/bed_to_protein_map.py	Tue Apr 07 11:33:11 2020 -0400
@@ -34,14 +34,14 @@
     try:
         for linenum, line in enumerate(input_rdr):
             if args.debug:
-                print >> sys.stderr, "%d: %s\n" % (linenum, line)
+                sys.stderr.write("%d: %s\n" % (linenum, line))
             if line.startswith('#'):
                 continue
             if line.strip() == '':
                 continue
             fields = line.rstrip('\r\n').split('\t')
             if len(fields) < 12:
-                print >> sys.stderr, "%d: %s\n" % (linenum, line)
+                sys.stderr.write("%d: %s\n" % (linenum, line))
                 continue
             (chrom, _chromStart, _chromEnd, name, score, strand,
              _thickStart, _thickEnd, itemRgb,
@@ -91,8 +91,8 @@
                                         strand, cds_start, cds_end))
                     cds_start = cds_end
                 pass
-    except Exception, e:
-        print >> sys.stderr, "failed: %s" % e
+    except Exception as e:
+        sys.stderr.write("failed: %s\n" % e)
         exit(1)