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comparison blastxml_to_tabular_selectable.xml @ 1:5da5dcc5e13a default tip

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Update from 24 to 25 columns and update versions to 1.0.0
author Jim Johnson <jj@umn.edu>
date Wed, 08 Oct 2014 18:57:39 -0500
parents 2bd0cbccb3c6
children
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0:2bd0cbccb3c6 1:5da5dcc5e13a
1 <tool id="blastxml_to_tabular_selectable" name="BLAST XML to selected tabular columns" version="0.0.9"> 1 <tool id="blastxml_to_tabular_selectable" name="BLAST XML to selected tabular columns" version="1.0.0">
2 <description>Convert BLAST XML output to tabular</description> 2 <description>Convert BLAST XML output to tabular</description>
3 <command interpreter="python"> 3 <command interpreter="python">
4 blastxml_to_tabular_selectable.py -o $tabular_file 4 blastxml_to_tabular_selectable.py -o $tabular_file
5 #if $output.out_format == 'cols' and $output.columns: 5 #if $output.out_format == 'cols' and $output.columns:
6 -c '$output.columns' 6 -c '$output.columns'
34 </param> 34 </param>
35 35
36 <conditional name="output"> 36 <conditional name="output">
37 <param name="out_format" type="select" label="Output format"> 37 <param name="out_format" type="select" label="Output format">
38 <option value="std" selected="True">Tabular (standard 12 columns)</option> 38 <option value="std" selected="True">Tabular (standard 12 columns)</option>
39 <option value="ext">Tabular (extended 24 columns)</option> 39 <option value="ext">Tabular (extended 25 columns)</option>
40 <option value="cols">Tabular (select columns to output)</option> 40 <option value="cols">Tabular (select columns to output)</option>
41 </param> 41 </param>
42 <when value="std"/> 42 <when value="std"/>
43 <when value="ext"/> 43 <when value="ext"/>
44 <when value="cols"> 44 <when value="cols">