Mercurial > repos > galaxyp > bumbershoot

comparison idpicker.xml @ 0:35cf23cd8c3d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Initial commit.
author galaxyp
date Fri, 10 May 2013 17:06:14 -0400
parents
children 26ad516cebca
comparison
equal deleted inserted replaced
-1:000000000000 0:35cf23cd8c3d
1 <tool id="idpicker" name="IDPicker 3" version="0.1.0">
2 <description>
3 Assemble parsimonious protien identifications.
4 </description>
5 <configfiles>
6 <configfile name="group_config"># Simple format group:group_name followed by pairs of name:name and path:path lines
7 #for $group in $groups:
8 group:$group.group_name
9 #for $idpdb_input in $group.idpdb_inputs:
10 name:${idpdb_input.display_name}
11 path:${idpdb_input}
12 #end for
13 #end for
14 </configfile>
15 </configfiles>
16 <command interpreter="python">
17 idpicker_wrapper.py --input $group_config --output $output
18 </command>
19 <inputs>
20 <param format="idpdb" name="outside_inputs" type="data" multiple="true" label="idpDB Inputs" help="Run results through idpQonvert tool to produce idpDB files for IDPicker." />
21 <repeat name="groups" title="Experimental Group">
22 <param name="group_name" type="text" label="Group Name" help="Name for the group (use only letters and numbers)." />
23 <param format="idpdb" name="idpdb_inputs" type="data" multiple="true" label="idpDB Inputs" help="Run results through idpQonvert tool to produce idpDB files for IDPicker." />
24 </repeat>
25 </inputs>
26 <outputs>
27 <data format="idpdb" name="output" />
28 </outputs>
29 <requirements>
30 <requirement type="package">idpicker</requirement>
31 </requirements>
32 <help>
33 **WARNING**
34
35 This tool does not current work.
36
37 **What it does**
38
39
40
41 ** Building Groups **
42
43 Build arbitrary hierarchy by nesting groups with colon (e.g. control:666Gx6).
44
45 http://fenchurch.mc.vanderbilt.edu/bumbershoot/idpicker/index_files/image003.gif
46
47 ------
48
49
50 **Citation**
51
52 For the underlying tool, please cite `TODO`
53
54 If you use this tool in Galaxy, please cite TODO
55 </help>
56 </tool>