comparison test-data/112_auto_combined.imzml @ 5:b41107d8fe89 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
author galaxyp
date Fri, 13 Dec 2019 13:54:23 -0500
parents 129cddd02600
children 392b2dfd261d
comparison
equal deleted inserted replaced
4:48c07268f341 5:b41107d8fe89
7 </cvList> 7 </cvList>
8 <fileDescription> 8 <fileDescription>
9 <fileContent> 9 <fileContent>
10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> 10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" />
11 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" /> 11 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" />
12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="{00A83E55-A8F8-41D4-BBAC-345FA77AAB7E}" /> 12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="a0620366-fee2-4a2a-a643-0f0e0c9ae5a6" />
13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="9B17E43E3D3B35BE3CD0AE65F40E0C6B27C2752F" /> 13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="9bcd78ace1e6441dc527501b5eb3994fcf15b894" />
14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" /> 14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" />
15 </fileContent> 15 </fileContent>
16 </fileDescription> 16 </fileDescription>
17 <referenceableParamGroupList count="4"> 17 <referenceableParamGroupList count="4">
18 <referenceableParamGroup id="spectrum1"> 18 <referenceableParamGroup id="spectrum1">
20 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="0" /> 20 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="0" />
21 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" /> 21 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" />
22 </referenceableParamGroup> 22 </referenceableParamGroup>
23 <referenceableParamGroup id="scan1"> 23 <referenceableParamGroup id="scan1">
24 <cvParam cvRef="MS" accession="MS:1000093" name="increasing m/z scan" value="" /> 24 <cvParam cvRef="MS" accession="MS:1000093" name="increasing m/z scan" value="" />
25 <cvParam cvRef="MS" accession="MS:1000095" name="linear" value="" />
26 </referenceableParamGroup> 25 </referenceableParamGroup>
27 <referenceableParamGroup id="mzArray"> 26 <referenceableParamGroup id="mzArray">
28 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" /> 27 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" />
29 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z" /> 28 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z" />
30 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" /> 29 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" />
31 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="32-bit float" /> 30 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="" />
32 </referenceableParamGroup> 31 </referenceableParamGroup>
33 <referenceableParamGroup id="intensityArray"> 32 <referenceableParamGroup id="intensityArray">
34 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" /> 33 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" />
35 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of counts" /> 34 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of counts" />
36 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" /> 35 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" />
37 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="32-bit float" /> 36 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="" />
38 </referenceableParamGroup> 37 </referenceableParamGroup>
39 </referenceableParamGroupList> 38 </referenceableParamGroupList>
40 <sampleList count="1"> 39 <sampleList count="1">
41 <sample id="sample1" name="Sample1"> 40 <sample id="sample1" name="Sample1">
42 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" /> 41 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" />
43 </sample> 42 </sample>
44 </sampleList> 43 </sampleList>
45 <softwareList count="1"> 44 <softwareList count="1">
46 <software id="Cardinal" version="1.12.1"> 45 <software id="Cardinal" version="2.2.6">
47 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> 46 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
48 </software> 47 </software>
49 </softwareList> 48 </softwareList>
50 <scanSettingsList count="1"> 49 <scanSettingsList count="1">
51 <scanSettings id="scansettings1"> 50 <scanSettings id="scansettings1">
52 <cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="15" /> 51 <cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="5" />
53 <cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="3" /> 52 <cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="3" />
53 <cvParam cvRef="IMS" accession="IMS:1000044" name="max dimension x" value="15" />
54 <cvParam cvRef="IMS" accession="IMS:1000045" name="max dimension y" value="3" />
55 <cvParam cvRef="IMS" accession="IMS:1000046" name="pixel size x" value="1.000000" />
56 <cvParam cvRef="IMS" accession="IMS:1000047" name="pixel size y" value="1.000000" />
54 </scanSettings> 57 </scanSettings>
55 </scanSettingsList> 58 </scanSettingsList>
56 <instrumentConfigurationList count="1"> 59 <instrumentConfigurationList count="1">
57 <instrumentConfiguration id="IC1" /> 60 <instrumentConfiguration id="IC1">
61 <cvParam cvRef="MS" accession="MS:1000031" name="instrument model" />
62 </instrumentConfiguration>
58 </instrumentConfigurationList> 63 </instrumentConfigurationList>
59 <dataProcessingList count="1"> 64 <dataProcessingList count="1">
60 <dataProcessing id="CardinalWriteImzML"> 65 <dataProcessing id="CardinalWriteImzML">
61 <processingMethod order="1" softwareRef="Cardinal"> 66 <processingMethod order="1" softwareRef="Cardinal">
62 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value="" /> 67 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value="" />