Mercurial > repos > galaxyp > cardinal_filtering
diff filtering.xml @ 10:a4475567dd22 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit ca89f8e007c6b17f7c30066729e05b8686ab975a"
author | galaxyp |
---|---|
date | Sun, 27 Sep 2020 10:54:29 +0000 |
parents | e92efed83208 |
children | 105056844497 |
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--- a/filtering.xml Thu Sep 24 11:39:44 2020 +0000 +++ b/filtering.xml Sun Sep 27 10:54:29 2020 +0000 @@ -386,9 +386,7 @@ guides(fill=guide_legend(ncol=5,byrow=TRUE)) print(histogram_mz + scale_fill_manual(values=c("#00BFC4", "#F8766D"))) - - - dev.off() + dev.off() ## save msidata as imzML file, will only work if there is at least 1 m/z left @@ -396,6 +394,7 @@ ## make sure that coordinates are integers coord(msidata)\$y = as.integer(coord(msidata)\$y) coord(msidata)\$x = as.integer(coord(msidata)\$x) + msidata = as(msidata, "MSContinuousImagingExperiment") writeImzML(msidata, "out")}