Mercurial > repos > galaxyp > cardinal_filtering

diff filtering.xml @ 9:e92efed83208 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
author galaxyp
date Thu, 24 Sep 2020 11:39:44 +0000
parents 1d4a6fe69a40
children a4475567dd22
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line diff
--- a/filtering.xml	Wed May 13 14:11:34 2020 -0400
+++ b/filtering.xml	Thu Sep 24 11:39:44 2020 +0000
@@ -5,7 +5,7 @@
     </macros>
     <expand macro="requirements">
         <requirement type="package" version="2.3">r-gridextra</requirement>
-        <requirement type="package" version="3.2.1">r-ggplot2</requirement>
+        <requirement type="package" version="3.3.2">r-ggplot2</requirement>
     </expand>
     <expand macro="print_version"/>
     <command detect_errors="exit_code">
@@ -365,7 +365,7 @@
            theme(plot.title = element_text(hjust = 0.5))+
            theme(legend.position="bottom",legend.direction="vertical")+
            guides(fill=guide_legend(ncol=5,byrow=TRUE))
-    print(pixel_image)
+    print(pixel_image + scale_fill_manual(values=c("#00BFC4", "#F8766D")))
 
 
     ### visual mz feature control
@@ -384,7 +384,8 @@
         theme(legend.position="bottom",legend.direction="vertical")+
         labs(title="Overview of filtered m/z", x="m/z", y = "count") +
         guides(fill=guide_legend(ncol=5,byrow=TRUE))
-      print(histogram_mz)
+      print(histogram_mz + scale_fill_manual(values=c("#00BFC4", "#F8766D")))
+
 
 
         dev.off()
@@ -525,7 +526,7 @@
             <expand macro="processed_infile_imzml"/>
             <conditional name="processed_cond">
                 <param name="processed_file" value="processed"/>
-                <param name="accuracy" value="100"/>
+                <param name="accuracy" value="200"/>
                 <param name="units" value="ppm"/>
             </conditional>
             <param name="pixel_filtering" value="two_columns"/>