comparison test-data/preprocessing_results2.imzml @ 6:25b83cbd596a draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
author galaxyp
date Wed, 25 Mar 2020 05:31:15 -0400
parents 773a24b240e1
children a69865da6f80
comparison
equal deleted inserted replaced
5:4a05e47cd0ea 6:25b83cbd596a
7 </cvList> 7 </cvList>
8 <fileDescription> 8 <fileDescription>
9 <fileContent> 9 <fileContent>
10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> 10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" />
11 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value="" /> 11 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value="" />
12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="{40F230A1-1893-4A8C-BAE2-A8BBEF24DB20}" /> 12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="e536d1e2-427b-4c5b-9743-8210ae52a564" />
13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="417ADF38FBC4D0304A9B75B4C85799137846DD2F" /> 13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="7cea783e9d345946b874fc1f25d40ce90bffd2f9" />
14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" /> 14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" />
15 </fileContent> 15 </fileContent>
16 </fileDescription> 16 </fileDescription>
17 <referenceableParamGroupList count="4"> 17 <referenceableParamGroupList count="4">
18 <referenceableParamGroup id="spectrum1"> 18 <referenceableParamGroup id="spectrum1">
20 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="0" /> 20 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="0" />
21 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value="" /> 21 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value="" />
22 </referenceableParamGroup> 22 </referenceableParamGroup>
23 <referenceableParamGroup id="scan1"> 23 <referenceableParamGroup id="scan1">
24 <cvParam cvRef="MS" accession="MS:1000093" name="increasing m/z scan" value="" /> 24 <cvParam cvRef="MS" accession="MS:1000093" name="increasing m/z scan" value="" />
25 <cvParam cvRef="MS" accession="MS:1000095" name="linear" value="" />
26 </referenceableParamGroup> 25 </referenceableParamGroup>
27 <referenceableParamGroup id="mzArray"> 26 <referenceableParamGroup id="mzArray">
28 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" /> 27 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" />
29 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z" /> 28 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z" />
30 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" /> 29 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" />
31 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="32-bit float" /> 30 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="" />
32 </referenceableParamGroup> 31 </referenceableParamGroup>
33 <referenceableParamGroup id="intensityArray"> 32 <referenceableParamGroup id="intensityArray">
34 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" /> 33 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" />
35 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of counts" /> 34 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of counts" />
36 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" /> 35 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" />
37 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="32-bit float" /> 36 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="" />
38 </referenceableParamGroup> 37 </referenceableParamGroup>
39 </referenceableParamGroupList> 38 </referenceableParamGroupList>
40 <sampleList count="1"> 39 <sampleList count="1">
41 <sample id="sample1" name="Sample1"> 40 <sample id="sample1" name="Sample1">
42 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" /> 41 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" />
43 </sample> 42 </sample>
44 </sampleList> 43 </sampleList>
45 <softwareList count="1"> 44 <softwareList count="1">
46 <software id="Cardinal" version="1.12.1"> 45 <software id="Cardinal" version="2.4.0">
47 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> 46 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
48 </software> 47 </software>
49 </softwareList> 48 </softwareList>
50 <scanSettingsList count="1"> 49 <scanSettingsList count="1">
51 <scanSettings id="scansettings1"> 50 <scanSettings id="scansettings1">
52 <cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="9" /> 51 <cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="4" />
53 <cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="3" /> 52 <cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="3" />
53 <cvParam cvRef="IMS" accession="IMS:1000044" name="max dimension x" value="9" />
54 <cvParam cvRef="IMS" accession="IMS:1000045" name="max dimension y" value="3" />
55 <cvParam cvRef="IMS" accession="IMS:1000046" name="pixel size x" value="1.000000" />
56 <cvParam cvRef="IMS" accession="IMS:1000047" name="pixel size y" value="1.000000" />
54 </scanSettings> 57 </scanSettings>
55 </scanSettingsList> 58 </scanSettingsList>
56 <instrumentConfigurationList count="1"> 59 <instrumentConfigurationList count="1">
57 <instrumentConfiguration id="IC1" /> 60 <instrumentConfiguration id="IC1">
61 <cvParam cvRef="MS" accession="MS:1000031" name="instrument model" />
62 </instrumentConfiguration>
58 </instrumentConfigurationList> 63 </instrumentConfigurationList>
59 <dataProcessingList count="1"> 64 <dataProcessingList count="1">
60 <dataProcessing id="CardinalWriteImzML"> 65 <dataProcessing id="CardinalWriteImzML">
61 <processingMethod order="1" softwareRef="Cardinal"> 66 <processingMethod order="1" softwareRef="Cardinal">
62 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value="" /> 67 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value="" />
71 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 76 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
72 <scan instrumentConfigurationRef="IC1"> 77 <scan instrumentConfigurationRef="IC1">
73 <referenceableParamGroupRef ref="scan1" /> 78 <referenceableParamGroupRef ref="scan1" />
74 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> 79 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" />
75 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> 80 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" />
76 </scan> 81 <userParam name="3DPositionX" value="1.000000" />
77 </scanList> 82 <userParam name="3DPositionY" value="1.000000" />
78 <binaryDataArrayList count="2"> 83 </scan>
79 <binaryDataArray encodedLength="0"> 84 </scanList>
80 <referenceableParamGroupRef ref="mzArray" /> 85 <binaryDataArrayList count="2">
81 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 86 <binaryDataArray encodedLength="0">
82 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 87 <referenceableParamGroupRef ref="mzArray" />
83 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 88 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
84 <binary /> 89 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
85 </binaryDataArray> 90 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
86 <binaryDataArray encodedLength="0"> 91 <binary />
87 <referenceableParamGroupRef ref="intensityArray" /> 92 </binaryDataArray>
88 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="4224" /> 93 <binaryDataArray encodedLength="0">
89 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 94 <referenceableParamGroupRef ref="intensityArray" />
90 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 95 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="2892" />
96 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
97 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
91 <binary /> 98 <binary />
92 </binaryDataArray> 99 </binaryDataArray>
93 </binaryDataArrayList> 100 </binaryDataArrayList>
94 </spectrum> 101 </spectrum>
95 <spectrum id="Spectrum=2" defaultArrayLength="0" index="2"> 102 <spectrum id="Spectrum=2" defaultArrayLength="0" index="2">
98 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 105 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
99 <scan instrumentConfigurationRef="IC1"> 106 <scan instrumentConfigurationRef="IC1">
100 <referenceableParamGroupRef ref="scan1" /> 107 <referenceableParamGroupRef ref="scan1" />
101 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> 108 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" />
102 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> 109 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" />
103 </scan> 110 <userParam name="3DPositionX" value="1.000000" />
104 </scanList> 111 <userParam name="3DPositionY" value="2.000000" />
105 <binaryDataArrayList count="2"> 112 </scan>
106 <binaryDataArray encodedLength="0"> 113 </scanList>
107 <referenceableParamGroupRef ref="mzArray" /> 114 <binaryDataArrayList count="2">
108 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 115 <binaryDataArray encodedLength="0">
109 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 116 <referenceableParamGroupRef ref="mzArray" />
110 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 117 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
111 <binary /> 118 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
112 </binaryDataArray> 119 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
113 <binaryDataArray encodedLength="0"> 120 <binary />
114 <referenceableParamGroupRef ref="intensityArray" /> 121 </binaryDataArray>
115 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="8432" /> 122 <binaryDataArray encodedLength="0">
116 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 123 <referenceableParamGroupRef ref="intensityArray" />
117 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 124 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="5768" />
125 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
126 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
118 <binary /> 127 <binary />
119 </binaryDataArray> 128 </binaryDataArray>
120 </binaryDataArrayList> 129 </binaryDataArrayList>
121 </spectrum> 130 </spectrum>
122 <spectrum id="Spectrum=3" defaultArrayLength="0" index="3"> 131 <spectrum id="Spectrum=3" defaultArrayLength="0" index="3">
125 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 134 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
126 <scan instrumentConfigurationRef="IC1"> 135 <scan instrumentConfigurationRef="IC1">
127 <referenceableParamGroupRef ref="scan1" /> 136 <referenceableParamGroupRef ref="scan1" />
128 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> 137 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" />
129 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> 138 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" />
130 </scan> 139 <userParam name="3DPositionX" value="1.000000" />
131 </scanList> 140 <userParam name="3DPositionY" value="3.000000" />
132 <binaryDataArrayList count="2"> 141 </scan>
133 <binaryDataArray encodedLength="0"> 142 </scanList>
134 <referenceableParamGroupRef ref="mzArray" /> 143 <binaryDataArrayList count="2">
135 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 144 <binaryDataArray encodedLength="0">
136 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 145 <referenceableParamGroupRef ref="mzArray" />
137 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 146 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
138 <binary /> 147 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
139 </binaryDataArray> 148 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
140 <binaryDataArray encodedLength="0"> 149 <binary />
141 <referenceableParamGroupRef ref="intensityArray" /> 150 </binaryDataArray>
142 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="12640" /> 151 <binaryDataArray encodedLength="0">
143 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 152 <referenceableParamGroupRef ref="intensityArray" />
144 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 153 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="8644" />
154 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
155 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
145 <binary /> 156 <binary />
146 </binaryDataArray> 157 </binaryDataArray>
147 </binaryDataArrayList> 158 </binaryDataArrayList>
148 </spectrum> 159 </spectrum>
149 <spectrum id="Spectrum=4" defaultArrayLength="0" index="4"> 160 <spectrum id="Spectrum=4" defaultArrayLength="0" index="4">
152 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 163 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
153 <scan instrumentConfigurationRef="IC1"> 164 <scan instrumentConfigurationRef="IC1">
154 <referenceableParamGroupRef ref="scan1" /> 165 <referenceableParamGroupRef ref="scan1" />
155 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3" /> 166 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3" />
156 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> 167 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" />
157 </scan> 168 <userParam name="3DPositionX" value="3.000000" />
158 </scanList> 169 <userParam name="3DPositionY" value="1.000000" />
159 <binaryDataArrayList count="2"> 170 </scan>
160 <binaryDataArray encodedLength="0"> 171 </scanList>
161 <referenceableParamGroupRef ref="mzArray" /> 172 <binaryDataArrayList count="2">
162 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 173 <binaryDataArray encodedLength="0">
163 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 174 <referenceableParamGroupRef ref="mzArray" />
164 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 175 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
165 <binary /> 176 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
166 </binaryDataArray> 177 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
167 <binaryDataArray encodedLength="0"> 178 <binary />
168 <referenceableParamGroupRef ref="intensityArray" /> 179 </binaryDataArray>
169 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16848" /> 180 <binaryDataArray encodedLength="0">
170 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 181 <referenceableParamGroupRef ref="intensityArray" />
171 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 182 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="11520" />
183 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
184 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
172 <binary /> 185 <binary />
173 </binaryDataArray> 186 </binaryDataArray>
174 </binaryDataArrayList> 187 </binaryDataArrayList>
175 </spectrum> 188 </spectrum>
176 <spectrum id="Spectrum=5" defaultArrayLength="0" index="5"> 189 <spectrum id="Spectrum=5" defaultArrayLength="0" index="5">
179 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 192 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
180 <scan instrumentConfigurationRef="IC1"> 193 <scan instrumentConfigurationRef="IC1">
181 <referenceableParamGroupRef ref="scan1" /> 194 <referenceableParamGroupRef ref="scan1" />
182 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="4" /> 195 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="4" />
183 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> 196 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" />
184 </scan> 197 <userParam name="3DPositionX" value="4.000000" />
185 </scanList> 198 <userParam name="3DPositionY" value="1.000000" />
186 <binaryDataArrayList count="2"> 199 </scan>
187 <binaryDataArray encodedLength="0"> 200 </scanList>
188 <referenceableParamGroupRef ref="mzArray" /> 201 <binaryDataArrayList count="2">
189 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 202 <binaryDataArray encodedLength="0">
190 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 203 <referenceableParamGroupRef ref="mzArray" />
191 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 204 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
192 <binary /> 205 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
193 </binaryDataArray> 206 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
194 <binaryDataArray encodedLength="0"> 207 <binary />
195 <referenceableParamGroupRef ref="intensityArray" /> 208 </binaryDataArray>
196 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="21056" /> 209 <binaryDataArray encodedLength="0">
197 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 210 <referenceableParamGroupRef ref="intensityArray" />
198 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 211 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="14396" />
212 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
213 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
199 <binary /> 214 <binary />
200 </binaryDataArray> 215 </binaryDataArray>
201 </binaryDataArrayList> 216 </binaryDataArrayList>
202 </spectrum> 217 </spectrum>
203 <spectrum id="Spectrum=6" defaultArrayLength="0" index="6"> 218 <spectrum id="Spectrum=6" defaultArrayLength="0" index="6">
206 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 221 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
207 <scan instrumentConfigurationRef="IC1"> 222 <scan instrumentConfigurationRef="IC1">
208 <referenceableParamGroupRef ref="scan1" /> 223 <referenceableParamGroupRef ref="scan1" />
209 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3" /> 224 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3" />
210 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> 225 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" />
211 </scan> 226 <userParam name="3DPositionX" value="3.000000" />
212 </scanList> 227 <userParam name="3DPositionY" value="2.000000" />
213 <binaryDataArrayList count="2"> 228 </scan>
214 <binaryDataArray encodedLength="0"> 229 </scanList>
215 <referenceableParamGroupRef ref="mzArray" /> 230 <binaryDataArrayList count="2">
216 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 231 <binaryDataArray encodedLength="0">
217 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 232 <referenceableParamGroupRef ref="mzArray" />
218 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 233 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
219 <binary /> 234 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
220 </binaryDataArray> 235 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
221 <binaryDataArray encodedLength="0"> 236 <binary />
222 <referenceableParamGroupRef ref="intensityArray" /> 237 </binaryDataArray>
223 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="25264" /> 238 <binaryDataArray encodedLength="0">
224 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 239 <referenceableParamGroupRef ref="intensityArray" />
225 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 240 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="17272" />
241 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
242 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
226 <binary /> 243 <binary />
227 </binaryDataArray> 244 </binaryDataArray>
228 </binaryDataArrayList> 245 </binaryDataArrayList>
229 </spectrum> 246 </spectrum>
230 <spectrum id="Spectrum=7" defaultArrayLength="0" index="7"> 247 <spectrum id="Spectrum=7" defaultArrayLength="0" index="7">
233 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 250 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
234 <scan instrumentConfigurationRef="IC1"> 251 <scan instrumentConfigurationRef="IC1">
235 <referenceableParamGroupRef ref="scan1" /> 252 <referenceableParamGroupRef ref="scan1" />
236 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="4" /> 253 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="4" />
237 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> 254 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" />
238 </scan> 255 <userParam name="3DPositionX" value="4.000000" />
239 </scanList> 256 <userParam name="3DPositionY" value="2.000000" />
240 <binaryDataArrayList count="2"> 257 </scan>
241 <binaryDataArray encodedLength="0"> 258 </scanList>
242 <referenceableParamGroupRef ref="mzArray" /> 259 <binaryDataArrayList count="2">
243 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 260 <binaryDataArray encodedLength="0">
244 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 261 <referenceableParamGroupRef ref="mzArray" />
245 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 262 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
246 <binary /> 263 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
247 </binaryDataArray> 264 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
248 <binaryDataArray encodedLength="0"> 265 <binary />
249 <referenceableParamGroupRef ref="intensityArray" /> 266 </binaryDataArray>
250 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="29472" /> 267 <binaryDataArray encodedLength="0">
251 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 268 <referenceableParamGroupRef ref="intensityArray" />
252 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 269 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="20148" />
270 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
271 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
253 <binary /> 272 <binary />
254 </binaryDataArray> 273 </binaryDataArray>
255 </binaryDataArrayList> 274 </binaryDataArrayList>
256 </spectrum> 275 </spectrum>
257 <spectrum id="Spectrum=8" defaultArrayLength="0" index="8"> 276 <spectrum id="Spectrum=8" defaultArrayLength="0" index="8">
260 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 279 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
261 <scan instrumentConfigurationRef="IC1"> 280 <scan instrumentConfigurationRef="IC1">
262 <referenceableParamGroupRef ref="scan1" /> 281 <referenceableParamGroupRef ref="scan1" />
263 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3" /> 282 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3" />
264 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> 283 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" />
265 </scan> 284 <userParam name="3DPositionX" value="3.000000" />
266 </scanList> 285 <userParam name="3DPositionY" value="3.000000" />
267 <binaryDataArrayList count="2"> 286 </scan>
268 <binaryDataArray encodedLength="0"> 287 </scanList>
269 <referenceableParamGroupRef ref="mzArray" /> 288 <binaryDataArrayList count="2">
270 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 289 <binaryDataArray encodedLength="0">
271 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 290 <referenceableParamGroupRef ref="mzArray" />
272 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 291 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
273 <binary /> 292 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
274 </binaryDataArray> 293 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
275 <binaryDataArray encodedLength="0"> 294 <binary />
276 <referenceableParamGroupRef ref="intensityArray" /> 295 </binaryDataArray>
277 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="33680" /> 296 <binaryDataArray encodedLength="0">
278 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 297 <referenceableParamGroupRef ref="intensityArray" />
279 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 298 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="23024" />
299 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
300 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
280 <binary /> 301 <binary />
281 </binaryDataArray> 302 </binaryDataArray>
282 </binaryDataArrayList> 303 </binaryDataArrayList>
283 </spectrum> 304 </spectrum>
284 <spectrum id="Spectrum=9" defaultArrayLength="0" index="9"> 305 <spectrum id="Spectrum=9" defaultArrayLength="0" index="9">
287 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 308 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
288 <scan instrumentConfigurationRef="IC1"> 309 <scan instrumentConfigurationRef="IC1">
289 <referenceableParamGroupRef ref="scan1" /> 310 <referenceableParamGroupRef ref="scan1" />
290 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="4" /> 311 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="4" />
291 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> 312 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" />
292 </scan> 313 <userParam name="3DPositionX" value="4.000000" />
293 </scanList> 314 <userParam name="3DPositionY" value="3.000000" />
294 <binaryDataArrayList count="2"> 315 </scan>
295 <binaryDataArray encodedLength="0"> 316 </scanList>
296 <referenceableParamGroupRef ref="mzArray" /> 317 <binaryDataArrayList count="2">
297 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 318 <binaryDataArray encodedLength="0">
298 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 319 <referenceableParamGroupRef ref="mzArray" />
299 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 320 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
300 <binary /> 321 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
301 </binaryDataArray> 322 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
302 <binaryDataArray encodedLength="0"> 323 <binary />
303 <referenceableParamGroupRef ref="intensityArray" /> 324 </binaryDataArray>
304 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="37888" /> 325 <binaryDataArray encodedLength="0">
305 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 326 <referenceableParamGroupRef ref="intensityArray" />
306 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 327 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="25900" />
328 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
329 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
307 <binary /> 330 <binary />
308 </binaryDataArray> 331 </binaryDataArray>
309 </binaryDataArrayList> 332 </binaryDataArrayList>
310 </spectrum> 333 </spectrum>
311 <spectrum id="Spectrum=10" defaultArrayLength="0" index="10"> 334 <spectrum id="Spectrum=10" defaultArrayLength="0" index="10">
314 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 337 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
315 <scan instrumentConfigurationRef="IC1"> 338 <scan instrumentConfigurationRef="IC1">
316 <referenceableParamGroupRef ref="scan1" /> 339 <referenceableParamGroupRef ref="scan1" />
317 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="9" /> 340 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="9" />
318 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> 341 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" />
319 </scan> 342 <userParam name="3DPositionX" value="9.000000" />
320 </scanList> 343 <userParam name="3DPositionY" value="1.000000" />
321 <binaryDataArrayList count="2"> 344 </scan>
322 <binaryDataArray encodedLength="0"> 345 </scanList>
323 <referenceableParamGroupRef ref="mzArray" /> 346 <binaryDataArrayList count="2">
324 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 347 <binaryDataArray encodedLength="0">
325 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 348 <referenceableParamGroupRef ref="mzArray" />
326 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 349 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
327 <binary /> 350 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
328 </binaryDataArray> 351 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
329 <binaryDataArray encodedLength="0"> 352 <binary />
330 <referenceableParamGroupRef ref="intensityArray" /> 353 </binaryDataArray>
331 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="42096" /> 354 <binaryDataArray encodedLength="0">
332 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 355 <referenceableParamGroupRef ref="intensityArray" />
333 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 356 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="28776" />
357 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
358 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
334 <binary /> 359 <binary />
335 </binaryDataArray> 360 </binaryDataArray>
336 </binaryDataArrayList> 361 </binaryDataArrayList>
337 </spectrum> 362 </spectrum>
338 <spectrum id="Spectrum=11" defaultArrayLength="0" index="11"> 363 <spectrum id="Spectrum=11" defaultArrayLength="0" index="11">
341 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 366 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
342 <scan instrumentConfigurationRef="IC1"> 367 <scan instrumentConfigurationRef="IC1">
343 <referenceableParamGroupRef ref="scan1" /> 368 <referenceableParamGroupRef ref="scan1" />
344 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="9" /> 369 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="9" />
345 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> 370 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" />
346 </scan> 371 <userParam name="3DPositionX" value="9.000000" />
347 </scanList> 372 <userParam name="3DPositionY" value="2.000000" />
348 <binaryDataArrayList count="2"> 373 </scan>
349 <binaryDataArray encodedLength="0"> 374 </scanList>
350 <referenceableParamGroupRef ref="mzArray" /> 375 <binaryDataArrayList count="2">
351 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 376 <binaryDataArray encodedLength="0">
352 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 377 <referenceableParamGroupRef ref="mzArray" />
353 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 378 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
354 <binary /> 379 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
355 </binaryDataArray> 380 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
356 <binaryDataArray encodedLength="0"> 381 <binary />
357 <referenceableParamGroupRef ref="intensityArray" /> 382 </binaryDataArray>
358 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="46304" /> 383 <binaryDataArray encodedLength="0">
359 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 384 <referenceableParamGroupRef ref="intensityArray" />
360 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 385 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="31652" />
386 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
387 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
361 <binary /> 388 <binary />
362 </binaryDataArray> 389 </binaryDataArray>
363 </binaryDataArrayList> 390 </binaryDataArrayList>
364 </spectrum> 391 </spectrum>
365 <spectrum id="Spectrum=12" defaultArrayLength="0" index="12"> 392 <spectrum id="Spectrum=12" defaultArrayLength="0" index="12">
368 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 395 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
369 <scan instrumentConfigurationRef="IC1"> 396 <scan instrumentConfigurationRef="IC1">
370 <referenceableParamGroupRef ref="scan1" /> 397 <referenceableParamGroupRef ref="scan1" />
371 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="9" /> 398 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="9" />
372 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> 399 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" />
373 </scan> 400 <userParam name="3DPositionX" value="9.000000" />
374 </scanList> 401 <userParam name="3DPositionY" value="3.000000" />
375 <binaryDataArrayList count="2"> 402 </scan>
376 <binaryDataArray encodedLength="0"> 403 </scanList>
377 <referenceableParamGroupRef ref="mzArray" /> 404 <binaryDataArrayList count="2">
378 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 405 <binaryDataArray encodedLength="0">
379 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 406 <referenceableParamGroupRef ref="mzArray" />
380 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 407 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
381 <binary /> 408 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
382 </binaryDataArray> 409 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
383 <binaryDataArray encodedLength="0"> 410 <binary />
384 <referenceableParamGroupRef ref="intensityArray" /> 411 </binaryDataArray>
385 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="50512" /> 412 <binaryDataArray encodedLength="0">
386 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" /> 413 <referenceableParamGroupRef ref="intensityArray" />
387 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" /> 414 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="34528" />
415 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
416 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
388 <binary /> 417 <binary />
389 </binaryDataArray> 418 </binaryDataArray>
390 </binaryDataArrayList> 419 </binaryDataArrayList>
391 </spectrum> 420 </spectrum>
392 </spectrumList> 421 </spectrumList>