Mercurial > repos > galaxyp > cardinal_mz_images
diff macros.xml @ 9:08ebd8da780c draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
author | galaxyp |
---|---|
date | Thu, 24 Sep 2020 11:35:54 +0000 |
parents | a69865da6f80 |
children | 7828af552085 |
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--- a/macros.xml Wed May 13 14:27:51 2020 -0400 +++ b/macros.xml Thu Sep 24 11:35:54 2020 +0000 @@ -1,10 +1,10 @@ <macros> - <token name="@VERSION@">2.4.0</token> + <token name="@VERSION@">2.6.0</token> <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">bioconductor-cardinal</requirement> - <requirement type="package" version="3.6.1">r-base</requirement> + <!--requirement type="package" version="3.6.1">r-base</requirement--> <yield/> </requirements> </xml> @@ -175,7 +175,7 @@ - imzml file (upload imzml and ibd file via the "composite" function) `Introduction to the imzml format <https://ms-imaging.org/wp/imzml/>`_ - Analyze7.5 (upload hdr, img and t2m file via the "composite" function) - - Cardinal "MSImageSet" data saved as .RData + - Cardinal "MSImageSet" or "MSImagingExperiment" saved as .RData ]]></token> <token name="@MZ_TABULAR_INPUT_DESCRIPTION@"><![CDATA[ - Optional tabular file with m/z values: @@ -243,7 +243,7 @@ </param> <when value="no_processed"/> <when value="processed"> - <param name="accuracy" type="float" value="50" label="Mass accuracy to which the m/z values will be binned" help="This should be set to the native accuracy of the mass spectrometer, if known"/> + <param name="accuracy" type="float" value="50" label="Mass accuracy to which the m/z values will be binned"/> <param name="units" display="radio" type="select" label="Unit of the mass accuracy" help="either m/z or ppm"> <option value="mz" >mz</option> <option value="ppm" selected="True" >ppm</option>