Mercurial > repos > galaxyp > cardinal_preprocessing
comparison test-data/112_auto_combined.imzml @ 7:44a4b31fcbf3 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f986c51abe33c7f622d429a3c4a79ee24b33c1f3"
author | galaxyp |
---|---|
date | Thu, 23 Apr 2020 08:07:20 -0400 |
parents | ed9ed1e6cca2 |
children | ca727a6dede6 |
comparison
equal
deleted
inserted
replaced
6:5bf056c0354e | 7:44a4b31fcbf3 |
---|---|
7 </cvList> | 7 </cvList> |
8 <fileDescription> | 8 <fileDescription> |
9 <fileContent> | 9 <fileContent> |
10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> | 10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> |
11 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" /> | 11 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" /> |
12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="a0620366-fee2-4a2a-a643-0f0e0c9ae5a6" /> | 12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="de720b1f-c3fa-4596-b054-284efaff29fc" /> |
13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="9bcd78ace1e6441dc527501b5eb3994fcf15b894" /> | 13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="040b9782d76e25ebe9a6b7c27fdda7e27e711674" /> |
14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" /> | 14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" /> |
15 </fileContent> | 15 </fileContent> |
16 </fileDescription> | 16 </fileDescription> |
17 <referenceableParamGroupList count="4"> | 17 <referenceableParamGroupList count="4"> |
18 <referenceableParamGroup id="spectrum1"> | 18 <referenceableParamGroup id="spectrum1"> |
40 <sample id="sample1" name="Sample1"> | 40 <sample id="sample1" name="Sample1"> |
41 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" /> | 41 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" /> |
42 </sample> | 42 </sample> |
43 </sampleList> | 43 </sampleList> |
44 <softwareList count="1"> | 44 <softwareList count="1"> |
45 <software id="Cardinal" version="2.2.6"> | 45 <software id="Cardinal" version="2.4.0"> |
46 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> | 46 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> |
47 </software> | 47 </software> |
48 </softwareList> | 48 </softwareList> |
49 <scanSettingsList count="1"> | 49 <scanSettingsList count="1"> |
50 <scanSettings id="scansettings1"> | 50 <scanSettings id="scansettings1"> |
76 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> | 76 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
77 <scan instrumentConfigurationRef="IC1"> | 77 <scan instrumentConfigurationRef="IC1"> |
78 <referenceableParamGroupRef ref="scan1" /> | 78 <referenceableParamGroupRef ref="scan1" /> |
79 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> | 79 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> |
80 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> | 80 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> |
81 <userParam name="3DPositionX" value="1.000000" /> | |
82 <userParam name="3DPositionY" value="1.000000" /> | |
81 </scan> | 83 </scan> |
82 </scanList> | 84 </scanList> |
83 <binaryDataArrayList count="2"> | 85 <binaryDataArrayList count="2"> |
84 <binaryDataArray encodedLength="0"> | 86 <binaryDataArray encodedLength="0"> |
85 <referenceableParamGroupRef ref="mzArray" /> | 87 <referenceableParamGroupRef ref="mzArray" /> |
103 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> | 105 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
104 <scan instrumentConfigurationRef="IC1"> | 106 <scan instrumentConfigurationRef="IC1"> |
105 <referenceableParamGroupRef ref="scan1" /> | 107 <referenceableParamGroupRef ref="scan1" /> |
106 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> | 108 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> |
107 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> | 109 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> |
110 <userParam name="3DPositionX" value="1.000000" /> | |
111 <userParam name="3DPositionY" value="2.000000" /> | |
108 </scan> | 112 </scan> |
109 </scanList> | 113 </scanList> |
110 <binaryDataArrayList count="2"> | 114 <binaryDataArrayList count="2"> |
111 <binaryDataArray encodedLength="0"> | 115 <binaryDataArray encodedLength="0"> |
112 <referenceableParamGroupRef ref="mzArray" /> | 116 <referenceableParamGroupRef ref="mzArray" /> |
130 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> | 134 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
131 <scan instrumentConfigurationRef="IC1"> | 135 <scan instrumentConfigurationRef="IC1"> |
132 <referenceableParamGroupRef ref="scan1" /> | 136 <referenceableParamGroupRef ref="scan1" /> |
133 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> | 137 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> |
134 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> | 138 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> |
139 <userParam name="3DPositionX" value="1.000000" /> | |
140 <userParam name="3DPositionY" value="3.000000" /> | |
135 </scan> | 141 </scan> |
136 </scanList> | 142 </scanList> |
137 <binaryDataArrayList count="2"> | 143 <binaryDataArrayList count="2"> |
138 <binaryDataArray encodedLength="0"> | 144 <binaryDataArray encodedLength="0"> |
139 <referenceableParamGroupRef ref="mzArray" /> | 145 <referenceableParamGroupRef ref="mzArray" /> |
157 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> | 163 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
158 <scan instrumentConfigurationRef="IC1"> | 164 <scan instrumentConfigurationRef="IC1"> |
159 <referenceableParamGroupRef ref="scan1" /> | 165 <referenceableParamGroupRef ref="scan1" /> |
160 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="7" /> | 166 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="7" /> |
161 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> | 167 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> |
168 <userParam name="3DPositionX" value="7.000000" /> | |
169 <userParam name="3DPositionY" value="1.000000" /> | |
162 </scan> | 170 </scan> |
163 </scanList> | 171 </scanList> |
164 <binaryDataArrayList count="2"> | 172 <binaryDataArrayList count="2"> |
165 <binaryDataArray encodedLength="0"> | 173 <binaryDataArray encodedLength="0"> |
166 <referenceableParamGroupRef ref="mzArray" /> | 174 <referenceableParamGroupRef ref="mzArray" /> |
184 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> | 192 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
185 <scan instrumentConfigurationRef="IC1"> | 193 <scan instrumentConfigurationRef="IC1"> |
186 <referenceableParamGroupRef ref="scan1" /> | 194 <referenceableParamGroupRef ref="scan1" /> |
187 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="7" /> | 195 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="7" /> |
188 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> | 196 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> |
197 <userParam name="3DPositionX" value="7.000000" /> | |
198 <userParam name="3DPositionY" value="2.000000" /> | |
189 </scan> | 199 </scan> |
190 </scanList> | 200 </scanList> |
191 <binaryDataArrayList count="2"> | 201 <binaryDataArrayList count="2"> |
192 <binaryDataArray encodedLength="0"> | 202 <binaryDataArray encodedLength="0"> |
193 <referenceableParamGroupRef ref="mzArray" /> | 203 <referenceableParamGroupRef ref="mzArray" /> |
211 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> | 221 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
212 <scan instrumentConfigurationRef="IC1"> | 222 <scan instrumentConfigurationRef="IC1"> |
213 <referenceableParamGroupRef ref="scan1" /> | 223 <referenceableParamGroupRef ref="scan1" /> |
214 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="7" /> | 224 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="7" /> |
215 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> | 225 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> |
226 <userParam name="3DPositionX" value="7.000000" /> | |
227 <userParam name="3DPositionY" value="3.000000" /> | |
216 </scan> | 228 </scan> |
217 </scanList> | 229 </scanList> |
218 <binaryDataArrayList count="2"> | 230 <binaryDataArrayList count="2"> |
219 <binaryDataArray encodedLength="0"> | 231 <binaryDataArray encodedLength="0"> |
220 <referenceableParamGroupRef ref="mzArray" /> | 232 <referenceableParamGroupRef ref="mzArray" /> |
238 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> | 250 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
239 <scan instrumentConfigurationRef="IC1"> | 251 <scan instrumentConfigurationRef="IC1"> |
240 <referenceableParamGroupRef ref="scan1" /> | 252 <referenceableParamGroupRef ref="scan1" /> |
241 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="9" /> | 253 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="9" /> |
242 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> | 254 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> |
255 <userParam name="3DPositionX" value="9.000000" /> | |
256 <userParam name="3DPositionY" value="1.000000" /> | |
243 </scan> | 257 </scan> |
244 </scanList> | 258 </scanList> |
245 <binaryDataArrayList count="2"> | 259 <binaryDataArrayList count="2"> |
246 <binaryDataArray encodedLength="0"> | 260 <binaryDataArray encodedLength="0"> |
247 <referenceableParamGroupRef ref="mzArray" /> | 261 <referenceableParamGroupRef ref="mzArray" /> |
265 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> | 279 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
266 <scan instrumentConfigurationRef="IC1"> | 280 <scan instrumentConfigurationRef="IC1"> |
267 <referenceableParamGroupRef ref="scan1" /> | 281 <referenceableParamGroupRef ref="scan1" /> |
268 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="10" /> | 282 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="10" /> |
269 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> | 283 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> |
284 <userParam name="3DPositionX" value="10.000000" /> | |
285 <userParam name="3DPositionY" value="1.000000" /> | |
270 </scan> | 286 </scan> |
271 </scanList> | 287 </scanList> |
272 <binaryDataArrayList count="2"> | 288 <binaryDataArrayList count="2"> |
273 <binaryDataArray encodedLength="0"> | 289 <binaryDataArray encodedLength="0"> |
274 <referenceableParamGroupRef ref="mzArray" /> | 290 <referenceableParamGroupRef ref="mzArray" /> |
292 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> | 308 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
293 <scan instrumentConfigurationRef="IC1"> | 309 <scan instrumentConfigurationRef="IC1"> |
294 <referenceableParamGroupRef ref="scan1" /> | 310 <referenceableParamGroupRef ref="scan1" /> |
295 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="9" /> | 311 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="9" /> |
296 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> | 312 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> |
313 <userParam name="3DPositionX" value="9.000000" /> | |
314 <userParam name="3DPositionY" value="2.000000" /> | |
297 </scan> | 315 </scan> |
298 </scanList> | 316 </scanList> |
299 <binaryDataArrayList count="2"> | 317 <binaryDataArrayList count="2"> |
300 <binaryDataArray encodedLength="0"> | 318 <binaryDataArray encodedLength="0"> |
301 <referenceableParamGroupRef ref="mzArray" /> | 319 <referenceableParamGroupRef ref="mzArray" /> |
319 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> | 337 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
320 <scan instrumentConfigurationRef="IC1"> | 338 <scan instrumentConfigurationRef="IC1"> |
321 <referenceableParamGroupRef ref="scan1" /> | 339 <referenceableParamGroupRef ref="scan1" /> |
322 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="10" /> | 340 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="10" /> |
323 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> | 341 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> |
342 <userParam name="3DPositionX" value="10.000000" /> | |
343 <userParam name="3DPositionY" value="2.000000" /> | |
324 </scan> | 344 </scan> |
325 </scanList> | 345 </scanList> |
326 <binaryDataArrayList count="2"> | 346 <binaryDataArrayList count="2"> |
327 <binaryDataArray encodedLength="0"> | 347 <binaryDataArray encodedLength="0"> |
328 <referenceableParamGroupRef ref="mzArray" /> | 348 <referenceableParamGroupRef ref="mzArray" /> |
346 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> | 366 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
347 <scan instrumentConfigurationRef="IC1"> | 367 <scan instrumentConfigurationRef="IC1"> |
348 <referenceableParamGroupRef ref="scan1" /> | 368 <referenceableParamGroupRef ref="scan1" /> |
349 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="9" /> | 369 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="9" /> |
350 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> | 370 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> |
371 <userParam name="3DPositionX" value="9.000000" /> | |
372 <userParam name="3DPositionY" value="3.000000" /> | |
351 </scan> | 373 </scan> |
352 </scanList> | 374 </scanList> |
353 <binaryDataArrayList count="2"> | 375 <binaryDataArrayList count="2"> |
354 <binaryDataArray encodedLength="0"> | 376 <binaryDataArray encodedLength="0"> |
355 <referenceableParamGroupRef ref="mzArray" /> | 377 <referenceableParamGroupRef ref="mzArray" /> |
373 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> | 395 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
374 <scan instrumentConfigurationRef="IC1"> | 396 <scan instrumentConfigurationRef="IC1"> |
375 <referenceableParamGroupRef ref="scan1" /> | 397 <referenceableParamGroupRef ref="scan1" /> |
376 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="10" /> | 398 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="10" /> |
377 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> | 399 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> |
400 <userParam name="3DPositionX" value="10.000000" /> | |
401 <userParam name="3DPositionY" value="3.000000" /> | |
378 </scan> | 402 </scan> |
379 </scanList> | 403 </scanList> |
380 <binaryDataArrayList count="2"> | 404 <binaryDataArrayList count="2"> |
381 <binaryDataArray encodedLength="0"> | 405 <binaryDataArray encodedLength="0"> |
382 <referenceableParamGroupRef ref="mzArray" /> | 406 <referenceableParamGroupRef ref="mzArray" /> |
400 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> | 424 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
401 <scan instrumentConfigurationRef="IC1"> | 425 <scan instrumentConfigurationRef="IC1"> |
402 <referenceableParamGroupRef ref="scan1" /> | 426 <referenceableParamGroupRef ref="scan1" /> |
403 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="15" /> | 427 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="15" /> |
404 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> | 428 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> |
429 <userParam name="3DPositionX" value="15.000000" /> | |
430 <userParam name="3DPositionY" value="1.000000" /> | |
405 </scan> | 431 </scan> |
406 </scanList> | 432 </scanList> |
407 <binaryDataArrayList count="2"> | 433 <binaryDataArrayList count="2"> |
408 <binaryDataArray encodedLength="0"> | 434 <binaryDataArray encodedLength="0"> |
409 <referenceableParamGroupRef ref="mzArray" /> | 435 <referenceableParamGroupRef ref="mzArray" /> |
427 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> | 453 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
428 <scan instrumentConfigurationRef="IC1"> | 454 <scan instrumentConfigurationRef="IC1"> |
429 <referenceableParamGroupRef ref="scan1" /> | 455 <referenceableParamGroupRef ref="scan1" /> |
430 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="15" /> | 456 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="15" /> |
431 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> | 457 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> |
458 <userParam name="3DPositionX" value="15.000000" /> | |
459 <userParam name="3DPositionY" value="2.000000" /> | |
432 </scan> | 460 </scan> |
433 </scanList> | 461 </scanList> |
434 <binaryDataArrayList count="2"> | 462 <binaryDataArrayList count="2"> |
435 <binaryDataArray encodedLength="0"> | 463 <binaryDataArray encodedLength="0"> |
436 <referenceableParamGroupRef ref="mzArray" /> | 464 <referenceableParamGroupRef ref="mzArray" /> |
454 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> | 482 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
455 <scan instrumentConfigurationRef="IC1"> | 483 <scan instrumentConfigurationRef="IC1"> |
456 <referenceableParamGroupRef ref="scan1" /> | 484 <referenceableParamGroupRef ref="scan1" /> |
457 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="15" /> | 485 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="15" /> |
458 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> | 486 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> |
487 <userParam name="3DPositionX" value="15.000000" /> | |
488 <userParam name="3DPositionY" value="3.000000" /> | |
459 </scan> | 489 </scan> |
460 </scanList> | 490 </scanList> |
461 <binaryDataArrayList count="2"> | 491 <binaryDataArrayList count="2"> |
462 <binaryDataArray encodedLength="0"> | 492 <binaryDataArray encodedLength="0"> |
463 <referenceableParamGroupRef ref="mzArray" /> | 493 <referenceableParamGroupRef ref="mzArray" /> |