Mercurial > repos > galaxyp > cardinal_preprocessing
diff test-data/ComBat_results_Example_processed_file.imzml @ 18:83aac7741200 draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 91e77c139cb3b7c6d67727dc39140dd79355fa0c
author | galaxyp |
---|---|
date | Thu, 04 Jul 2024 13:38:14 +0000 |
parents | 611d80c0e29d |
children |
line wrap: on
line diff
--- a/test-data/ComBat_results_Example_processed_file.imzml Wed Apr 19 22:46:23 2023 +0000 +++ b/test-data/ComBat_results_Example_processed_file.imzml Thu Jul 04 13:38:14 2024 +0000 @@ -9,8 +9,8 @@ <fileContent> <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" /> - <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="82e7db90-df72-41f8-9ca7-7a19e966d5c1" /> - <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="259aa4b90129abb2f1f3107cf123f28d7c744f0c" /> + <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="bff0e5f4-5dea-4fc8-90c4-dd30b8464a7a" /> + <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="964c9332a0878edc5a2fc6420627334a9a43d442" /> <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" /> </fileContent> </fileDescription> @@ -42,16 +42,12 @@ </sample> </sampleList> <softwareList count="1"> - <software id="Cardinal" version="2.10.0"> + <software id="Cardinal" version="3.4.3"> <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> </software> </softwareList> <scanSettingsList count="1"> <scanSettings id="scansettings1"> - <cvParam cvRef="IMS" accession="IMS:1000401" name="top down" value="" /> - <cvParam cvRef="IMS" accession="IMS:1000413" name="flyback" value="" /> - <cvParam cvRef="IMS" accession="IMS:1000480" name="horizontal line scan" value="" /> - <cvParam cvRef="IMS" accession="IMS:1000491" name="linescan left right" value="" /> <cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="3" /> <cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="3" /> <cvParam cvRef="IMS" accession="IMS:1000044" name="max dimension x" value="3" /> @@ -90,15 +86,15 @@ <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="mzArray" /> <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="intensityArray" /> - <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="166372" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="41608" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> </binaryDataArrayList> @@ -119,15 +115,15 @@ <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="mzArray" /> <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="intensityArray" /> - <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="332728" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="83200" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> </binaryDataArrayList> @@ -148,15 +144,15 @@ <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="mzArray" /> <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="intensityArray" /> - <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="499084" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="124792" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> </binaryDataArrayList> @@ -177,15 +173,15 @@ <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="mzArray" /> <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="intensityArray" /> - <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="665440" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="166384" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> </binaryDataArrayList> @@ -206,15 +202,15 @@ <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="mzArray" /> <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="intensityArray" /> - <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="831796" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="207976" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> </binaryDataArrayList> @@ -235,15 +231,15 @@ <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="mzArray" /> <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="intensityArray" /> - <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="998152" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="249568" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> </binaryDataArrayList> @@ -264,15 +260,15 @@ <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="mzArray" /> <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="intensityArray" /> - <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="1164508" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="291160" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> </binaryDataArrayList> @@ -293,15 +289,15 @@ <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="mzArray" /> <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="intensityArray" /> - <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="1330864" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="332752" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> </binaryDataArrayList> @@ -322,15 +318,15 @@ <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="mzArray" /> <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> <binaryDataArray encodedLength="0"> <referenceableParamGroupRef ref="intensityArray" /> - <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="1497220" /> - <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> - <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> + <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="374344" /> + <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" /> + <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" /> <binary /> </binaryDataArray> </binaryDataArrayList>