Mercurial > repos > galaxyp > cardinal_quality_report

comparison quality_report.xml @ 10:f365bad862c9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
author galaxyp
date Thu, 24 Sep 2020 11:44:48 +0000
parents 0d4d4f16d455
children f396c176f366
comparison
equal deleted inserted replaced
9:0d4d4f16d455 10:f365bad862c9
1 <tool id="cardinal_quality_report" name="MSI Qualitycontrol" version="@VERSION@.1"> 1 <tool id="cardinal_quality_report" name="MSI Qualitycontrol" version="@VERSION@.0">
2 <description> 2 <description>
3 mass spectrometry imaging QC 3 mass spectrometry imaging QC
4 </description> 4 </description>
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
8 <expand macro="requirements"> 8 <expand macro="requirements">
9 <requirement type="package" version="2.3">r-gridextra</requirement> 9 <requirement type="package" version="2.3">r-gridextra</requirement>
10 <requirement type="package" version="3.2.1">r-ggplot2</requirement> 10 <requirement type="package" version="3.3.2">r-ggplot2</requirement>
11 <requirement type="package" version="1.1_2">r-rcolorbrewer</requirement> 11 <requirement type="package" version="1.1_2">r-rcolorbrewer</requirement>
12 <requirement type="package" version="2.23_16">r-kernsmooth</requirement> 12 <requirement type="package" version="2.23_17">r-kernsmooth</requirement>
13 <requirement type="package" version="1.1.0">r-scales</requirement> 13 <requirement type="package" version="1.1.1">r-scales</requirement>
14 <requirement type="package" version="1.0.12"> r-pheatmap</requirement> 14 <requirement type="package" version="1.0.12">r-pheatmap</requirement>
15 </expand> 15 </expand>
16 <command detect_errors="exit_code"> 16 <command detect_errors="exit_code">
17 <![CDATA[ 17 <![CDATA[
18 @INPUT_LINKING@ 18 @INPUT_LINKING@
19 cat '${cardinal_qualitycontrol_script}' && 19 cat '${cardinal_qualitycontrol_script}' &&
980 <composite_data value="Example_Processed.imzML"/> 980 <composite_data value="Example_Processed.imzML"/>
981 <composite_data value="Example_Processed.ibd"/> 981 <composite_data value="Example_Processed.ibd"/>
982 </param> 982 </param>
983 <conditional name="processed_cond"> 983 <conditional name="processed_cond">
984 <param name="processed_file" value="processed"/> 984 <param name="processed_file" value="processed"/>
985 <param name="accuracy" value="200"/> 985 <param name="accuracy" value="400"/>
986 <param name="units" value="ppm"/> 986 <param name="units" value="ppm"/>
987 </conditional> 987 </conditional>
988 <conditional name="tabular_annotation"> 988 <conditional name="tabular_annotation">
989 <param name="load_annotation" value="no_annotation"/> 989 <param name="load_annotation" value="no_annotation"/>
990 </conditional> 990 </conditional>