Mercurial > repos > galaxyp > cardinal_segmentations
annotate test-data/12_combined.imzml @ 5:b16b64ca7b7c draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
author | galaxyp |
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date | Fri, 13 Dec 2019 13:52:13 -0500 |
parents | |
children | 4a2ac25d1063 |
rev | line source |
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5
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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1 <?xml version="1.0"?> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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2 <mzML version="1.1" xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0_idx.xsd"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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3 <cvList count="3"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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4 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="1.3.1" URI="http://psidev.info/ms/mzML/psi-ms.obo" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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5 <cv id="UO" fullName="Unit Ontology" version="1.15" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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6 <cv id="IMS" fullName="Imaging MS Ontology" version="0.9.1" URI="http://www.maldi-msi.org/download/imzml/imagingMS.obo" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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7 </cvList> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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8 <fileDescription> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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9 <fileContent> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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11 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="e9aca5c3-32c8-416b-a9e9-e40ba239ce32" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="c0c53177dc3a008c7a18ba10fe139ccaecc295a2" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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15 </fileContent> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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16 </fileDescription> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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17 <referenceableParamGroupList count="4"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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18 <referenceableParamGroup id="spectrum1"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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19 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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20 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="0" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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21 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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22 </referenceableParamGroup> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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23 <referenceableParamGroup id="scan1"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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24 <cvParam cvRef="MS" accession="MS:1000093" name="increasing m/z scan" value="" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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25 </referenceableParamGroup> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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26 <referenceableParamGroup id="mzArray"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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27 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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28 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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29 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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30 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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31 </referenceableParamGroup> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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32 <referenceableParamGroup id="intensityArray"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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33 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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34 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of counts" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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35 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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36 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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37 </referenceableParamGroup> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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38 </referenceableParamGroupList> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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39 <sampleList count="1"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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40 <sample id="sample1" name="Sample1"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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41 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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42 </sample> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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43 </sampleList> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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44 <softwareList count="1"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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45 <software id="Cardinal" version="2.2.6"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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46 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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47 </software> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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48 </softwareList> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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49 <scanSettingsList count="1"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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50 <scanSettings id="scansettings1"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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51 <cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="3" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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52 <cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="3" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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53 <cvParam cvRef="IMS" accession="IMS:1000044" name="max dimension x" value="8" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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54 <cvParam cvRef="IMS" accession="IMS:1000045" name="max dimension y" value="3" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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55 <cvParam cvRef="IMS" accession="IMS:1000046" name="pixel size x" value="1.000000" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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56 <cvParam cvRef="IMS" accession="IMS:1000047" name="pixel size y" value="1.000000" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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57 </scanSettings> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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58 </scanSettingsList> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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59 <instrumentConfigurationList count="1"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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60 <instrumentConfiguration id="IC1"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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61 <cvParam cvRef="MS" accession="MS:1000031" name="instrument model" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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62 </instrumentConfiguration> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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63 </instrumentConfigurationList> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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64 <dataProcessingList count="1"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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65 <dataProcessing id="CardinalWriteImzML"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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66 <processingMethod order="1" softwareRef="Cardinal"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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67 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value="" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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68 </processingMethod> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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69 </dataProcessing> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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70 </dataProcessingList> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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71 <run defaultInstrumentConfigurationRef="IC1" id="Experiment01" sampleRef="sample1"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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72 <spectrumList count="9" defaultDataProcessingRef="CardinalWriteImzML"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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73 <spectrum id="Spectrum=1" defaultArrayLength="0" index="1"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
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74 <referenceableParamGroupRef ref="spectrum1" /> |
b16b64ca7b7c
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galaxyp
parents:
diff
changeset
|
75 <scanList count="1"> |
b16b64ca7b7c
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galaxyp
parents:
diff
changeset
|
76 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
b16b64ca7b7c
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galaxyp
parents:
diff
changeset
|
77 <scan instrumentConfigurationRef="IC1"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
diff
changeset
|
78 <referenceableParamGroupRef ref="scan1" /> |
b16b64ca7b7c
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galaxyp
parents:
diff
changeset
|
79 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> |
b16b64ca7b7c
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galaxyp
parents:
diff
changeset
|
80 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> |
b16b64ca7b7c
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galaxyp
parents:
diff
changeset
|
81 </scan> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
diff
changeset
|
82 </scanList> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
diff
changeset
|
83 <binaryDataArrayList count="2"> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
diff
changeset
|
84 <binaryDataArray encodedLength="0"> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
85 <referenceableParamGroupRef ref="mzArray" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
86 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
87 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
88 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
89 <binary /> |
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galaxyp
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diff
changeset
|
90 </binaryDataArray> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
91 <binaryDataArray encodedLength="0"> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
92 <referenceableParamGroupRef ref="intensityArray" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
93 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="33612" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
94 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
95 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
96 <binary /> |
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galaxyp
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diff
changeset
|
97 </binaryDataArray> |
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galaxyp
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diff
changeset
|
98 </binaryDataArrayList> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
99 </spectrum> |
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galaxyp
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diff
changeset
|
100 <spectrum id="Spectrum=2" defaultArrayLength="0" index="2"> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
101 <referenceableParamGroupRef ref="spectrum1" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
102 <scanList count="1"> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
103 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
104 <scan instrumentConfigurationRef="IC1"> |
b16b64ca7b7c
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galaxyp
parents:
diff
changeset
|
105 <referenceableParamGroupRef ref="scan1" /> |
b16b64ca7b7c
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galaxyp
parents:
diff
changeset
|
106 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
107 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> |
b16b64ca7b7c
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galaxyp
parents:
diff
changeset
|
108 </scan> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
109 </scanList> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
110 <binaryDataArrayList count="2"> |
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galaxyp
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diff
changeset
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111 <binaryDataArray encodedLength="0"> |
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galaxyp
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diff
changeset
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112 <referenceableParamGroupRef ref="mzArray" /> |
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galaxyp
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diff
changeset
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galaxyp
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diff
changeset
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b16b64ca7b7c
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galaxyp
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diff
changeset
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galaxyp
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changeset
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116 <binary /> |
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galaxyp
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diff
changeset
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117 </binaryDataArray> |
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galaxyp
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changeset
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galaxyp
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changeset
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119 <referenceableParamGroupRef ref="intensityArray" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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b16b64ca7b7c
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galaxyp
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diff
changeset
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b16b64ca7b7c
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galaxyp
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diff
changeset
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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126 </spectrum> |
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galaxyp
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changeset
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b16b64ca7b7c
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galaxyp
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changeset
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128 <referenceableParamGroupRef ref="spectrum1" /> |
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galaxyp
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changeset
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galaxyp
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diff
changeset
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galaxyp
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changeset
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131 <scan instrumentConfigurationRef="IC1"> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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132 <referenceableParamGroupRef ref="scan1" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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galaxyp
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diff
changeset
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galaxyp
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changeset
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135 </scan> |
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galaxyp
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changeset
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136 </scanList> |
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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139 <referenceableParamGroupRef ref="mzArray" /> |
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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diff
changeset
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galaxyp
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changeset
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143 <binary /> |
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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diff
changeset
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galaxyp
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changeset
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galaxyp
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diff
changeset
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150 <binary /> |
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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153 </spectrum> |
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galaxyp
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diff
changeset
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154 <spectrum id="Spectrum=4" defaultArrayLength="0" index="4"> |
b16b64ca7b7c
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diff
changeset
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155 <referenceableParamGroupRef ref="spectrum1" /> |
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galaxyp
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diff
changeset
|
156 <scanList count="1"> |
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galaxyp
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diff
changeset
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157 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
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galaxyp
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diff
changeset
|
158 <scan instrumentConfigurationRef="IC1"> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
159 <referenceableParamGroupRef ref="scan1" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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160 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="7" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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161 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
162 </scan> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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diff
changeset
|
163 </scanList> |
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galaxyp
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diff
changeset
|
164 <binaryDataArrayList count="2"> |
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galaxyp
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diff
changeset
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165 <binaryDataArray encodedLength="0"> |
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galaxyp
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diff
changeset
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166 <referenceableParamGroupRef ref="mzArray" /> |
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diff
changeset
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167 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
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diff
changeset
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galaxyp
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diff
changeset
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galaxyp
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diff
changeset
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galaxyp
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diff
changeset
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171 </binaryDataArray> |
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galaxyp
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changeset
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172 <binaryDataArray encodedLength="0"> |
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diff
changeset
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173 <referenceableParamGroupRef ref="intensityArray" /> |
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galaxyp
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diff
changeset
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galaxyp
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diff
changeset
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galaxyp
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diff
changeset
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galaxyp
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diff
changeset
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galaxyp
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diff
changeset
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178 </binaryDataArray> |
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galaxyp
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diff
changeset
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179 </binaryDataArrayList> |
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galaxyp
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diff
changeset
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180 </spectrum> |
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galaxyp
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diff
changeset
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galaxyp
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diff
changeset
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182 <referenceableParamGroupRef ref="spectrum1" /> |
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galaxyp
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changeset
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galaxyp
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diff
changeset
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changeset
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galaxyp
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diff
changeset
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186 <referenceableParamGroupRef ref="scan1" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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galaxyp
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diff
changeset
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galaxyp
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diff
changeset
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189 </scan> |
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galaxyp
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diff
changeset
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190 </scanList> |
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galaxyp
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changeset
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changeset
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galaxyp
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changeset
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galaxyp
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diff
changeset
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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changeset
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changeset
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galaxyp
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changeset
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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207 </spectrum> |
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galaxyp
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changeset
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galaxyp
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changeset
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changeset
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galaxyp
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changeset
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changeset
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galaxyp
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changeset
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213 <referenceableParamGroupRef ref="scan1" /> |
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galaxyp
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changeset
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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217 </scanList> |
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galaxyp
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changeset
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changeset
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changeset
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galaxyp
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changeset
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changeset
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changeset
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galaxyp
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changeset
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changeset
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changeset
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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diff
changeset
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232 </binaryDataArray> |
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galaxyp
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diff
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233 </binaryDataArrayList> |
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galaxyp
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diff
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234 </spectrum> |
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galaxyp
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diff
changeset
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235 <spectrum id="Spectrum=7" defaultArrayLength="0" index="7"> |
b16b64ca7b7c
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galaxyp
parents:
diff
changeset
|
236 <referenceableParamGroupRef ref="spectrum1" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
237 <scanList count="1"> |
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galaxyp
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diff
changeset
|
238 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
b16b64ca7b7c
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galaxyp
parents:
diff
changeset
|
239 <scan instrumentConfigurationRef="IC1"> |
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galaxyp
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diff
changeset
|
240 <referenceableParamGroupRef ref="scan1" /> |
b16b64ca7b7c
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galaxyp
parents:
diff
changeset
|
241 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="8" /> |
b16b64ca7b7c
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galaxyp
parents:
diff
changeset
|
242 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
243 </scan> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
parents:
diff
changeset
|
244 </scanList> |
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galaxyp
parents:
diff
changeset
|
245 <binaryDataArrayList count="2"> |
b16b64ca7b7c
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galaxyp
parents:
diff
changeset
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246 <binaryDataArray encodedLength="0"> |
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galaxyp
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diff
changeset
|
247 <referenceableParamGroupRef ref="mzArray" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
248 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
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galaxyp
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diff
changeset
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249 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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250 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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251 <binary /> |
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galaxyp
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diff
changeset
|
252 </binaryDataArray> |
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galaxyp
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diff
changeset
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253 <binaryDataArray encodedLength="0"> |
b16b64ca7b7c
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galaxyp
parents:
diff
changeset
|
254 <referenceableParamGroupRef ref="intensityArray" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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255 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="235188" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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256 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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257 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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258 <binary /> |
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galaxyp
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diff
changeset
|
259 </binaryDataArray> |
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galaxyp
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diff
changeset
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260 </binaryDataArrayList> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
261 </spectrum> |
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galaxyp
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diff
changeset
|
262 <spectrum id="Spectrum=8" defaultArrayLength="0" index="8"> |
b16b64ca7b7c
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galaxyp
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diff
changeset
|
263 <referenceableParamGroupRef ref="spectrum1" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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264 <scanList count="1"> |
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galaxyp
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diff
changeset
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265 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
b16b64ca7b7c
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galaxyp
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changeset
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266 <scan instrumentConfigurationRef="IC1"> |
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galaxyp
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diff
changeset
|
267 <referenceableParamGroupRef ref="scan1" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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268 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="7" /> |
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galaxyp
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diff
changeset
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269 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> |
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galaxyp
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diff
changeset
|
270 </scan> |
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galaxyp
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diff
changeset
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271 </scanList> |
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galaxyp
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changeset
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272 <binaryDataArrayList count="2"> |
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galaxyp
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changeset
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273 <binaryDataArray encodedLength="0"> |
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galaxyp
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diff
changeset
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274 <referenceableParamGroupRef ref="mzArray" /> |
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galaxyp
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diff
changeset
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galaxyp
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diff
changeset
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b16b64ca7b7c
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galaxyp
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diff
changeset
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277 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596" /> |
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galaxyp
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changeset
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278 <binary /> |
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galaxyp
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changeset
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279 </binaryDataArray> |
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galaxyp
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changeset
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280 <binaryDataArray encodedLength="0"> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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281 <referenceableParamGroupRef ref="intensityArray" /> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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galaxyp
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diff
changeset
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b16b64ca7b7c
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galaxyp
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diff
changeset
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galaxyp
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diff
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galaxyp
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changeset
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286 </binaryDataArray> |
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galaxyp
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changeset
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287 </binaryDataArrayList> |
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galaxyp
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diff
changeset
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288 </spectrum> |
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galaxyp
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changeset
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galaxyp
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diff
changeset
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290 <referenceableParamGroupRef ref="spectrum1" /> |
b16b64ca7b7c
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galaxyp
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changeset
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291 <scanList count="1"> |
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galaxyp
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diff
changeset
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292 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
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galaxyp
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changeset
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293 <scan instrumentConfigurationRef="IC1"> |
b16b64ca7b7c
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galaxyp
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diff
changeset
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294 <referenceableParamGroupRef ref="scan1" /> |
b16b64ca7b7c
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galaxyp
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changeset
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295 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="8" /> |
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galaxyp
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diff
changeset
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galaxyp
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changeset
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297 </scan> |
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galaxyp
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changeset
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298 </scanList> |
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galaxyp
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changeset
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galaxyp
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changeset
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b16b64ca7b7c
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galaxyp
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diff
changeset
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301 <referenceableParamGroupRef ref="mzArray" /> |
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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galaxyp
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changeset
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305 <binary /> |
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galaxyp
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changeset
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galaxyp
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changeset
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b16b64ca7b7c
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galaxyp
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changeset
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308 <referenceableParamGroupRef ref="intensityArray" /> |
b16b64ca7b7c
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galaxyp
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changeset
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b16b64ca7b7c
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galaxyp
parents:
diff
changeset
|
310 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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311 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596" /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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312 <binary /> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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313 </binaryDataArray> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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314 </binaryDataArrayList> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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315 </spectrum> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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316 </spectrumList> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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317 </run> |
b16b64ca7b7c
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
galaxyp
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318 </mzML> |