Mercurial > repos > galaxyp > cardinal_segmentations

comparison segmentation.xml @ 12:050bcc806da2 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 39bd480e8813fa7a96b640150365577a69885d17-dirty"
author galaxyp
date Sun, 29 Nov 2020 23:37:41 +0000
parents b591450b3d1c
children
comparison
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11:0159b15b1281 12:050bcc806da2
379 <output name="segmentationimages" file="centroids_rdata.pdf" compare="sim_size"/> 379 <output name="segmentationimages" file="centroids_rdata.pdf" compare="sim_size"/>
380 <output name="mzfeatures" file="toplabels_ssc.tabular"/> 380 <output name="mzfeatures" file="toplabels_ssc.tabular"/>
381 <output name="pixeloutput" file="classes_ssc.tabular"/> 381 <output name="pixeloutput" file="classes_ssc.tabular"/>
382 </test> 382 </test>
383 <test> 383 <test>
384 <param name="infile" value="" ftype="imzml"> 384 <expand macro="processed_infile_imzml"/>
385 <composite_data value="preprocessing_results3.imzml"/>
386 <composite_data value="preprocessing_results3.ibd"/>
387 </param>
388 <conditional name="processed_cond"> 385 <conditional name="processed_cond">
389 <param name="processed_file" value="processed"/> 386 <param name="processed_file" value="processed"/>
390 <param name="accuracy" value="1"/> 387 <param name="accuracy" value="200"/>
391 <param name="units" value="mz"/> 388 <param name="units" value="ppm"/>
392 </conditional> 389 </conditional>
393 <param name="segmentationtool" value="centroids"/> 390 <param name="segmentationtool" value="centroids"/>
394 <param name="centroids_r" value="1"/> 391 <param name="centroids_r" value="1"/>
395 <param name="centroids_k" value="2,3"/> 392 <param name="centroids_k" value="2,3"/>
396 <param name="centroids_s" value="0,3"/> 393 <param name="centroids_s" value="0,3"/>
406 </repeat> 403 </repeat>
407 <output name="segmentationimages" file="centroids_proc.pdf" compare="sim_size"/> 404 <output name="segmentationimages" file="centroids_proc.pdf" compare="sim_size"/>
408 <output name="pixeloutput" file="classes_proc.tabular"/> 405 <output name="pixeloutput" file="classes_proc.tabular"/>
409 <output name="mzfeatures"> 406 <output name="mzfeatures">
410 <assert_contents> 407 <assert_contents>
411 <has_text text="1212" /> 408 <has_text text="100.642" />
412 <has_text text="1297" /> 409 <has_text text="101.816297645089" />
413 <has_text text="1199" /> 410 <has_text text="1.34687866193417" />
414 <has_text text="1298" /> 411 <has_text text="6.43855724908388" />
415 <has_n_columns n="9" /> 412 <has_n_columns n="9" />
416 <has_n_lines n="101" /> 413 <has_n_lines n="101" />
417 </assert_contents> 414 </assert_contents>
418 </output> 415 </output>
419 </test> 416 </test>