Mercurial > repos > galaxyp > cardinal_segmentations
comparison segmentation.xml @ 12:050bcc806da2 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 39bd480e8813fa7a96b640150365577a69885d17-dirty"
author | galaxyp |
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date | Sun, 29 Nov 2020 23:37:41 +0000 |
parents | b591450b3d1c |
children | 91f0f5922011 |
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11:0159b15b1281 | 12:050bcc806da2 |
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379 <output name="segmentationimages" file="centroids_rdata.pdf" compare="sim_size"/> | 379 <output name="segmentationimages" file="centroids_rdata.pdf" compare="sim_size"/> |
380 <output name="mzfeatures" file="toplabels_ssc.tabular"/> | 380 <output name="mzfeatures" file="toplabels_ssc.tabular"/> |
381 <output name="pixeloutput" file="classes_ssc.tabular"/> | 381 <output name="pixeloutput" file="classes_ssc.tabular"/> |
382 </test> | 382 </test> |
383 <test> | 383 <test> |
384 <param name="infile" value="" ftype="imzml"> | 384 <expand macro="processed_infile_imzml"/> |
385 <composite_data value="preprocessing_results3.imzml"/> | |
386 <composite_data value="preprocessing_results3.ibd"/> | |
387 </param> | |
388 <conditional name="processed_cond"> | 385 <conditional name="processed_cond"> |
389 <param name="processed_file" value="processed"/> | 386 <param name="processed_file" value="processed"/> |
390 <param name="accuracy" value="1"/> | 387 <param name="accuracy" value="200"/> |
391 <param name="units" value="mz"/> | 388 <param name="units" value="ppm"/> |
392 </conditional> | 389 </conditional> |
393 <param name="segmentationtool" value="centroids"/> | 390 <param name="segmentationtool" value="centroids"/> |
394 <param name="centroids_r" value="1"/> | 391 <param name="centroids_r" value="1"/> |
395 <param name="centroids_k" value="2,3"/> | 392 <param name="centroids_k" value="2,3"/> |
396 <param name="centroids_s" value="0,3"/> | 393 <param name="centroids_s" value="0,3"/> |
406 </repeat> | 403 </repeat> |
407 <output name="segmentationimages" file="centroids_proc.pdf" compare="sim_size"/> | 404 <output name="segmentationimages" file="centroids_proc.pdf" compare="sim_size"/> |
408 <output name="pixeloutput" file="classes_proc.tabular"/> | 405 <output name="pixeloutput" file="classes_proc.tabular"/> |
409 <output name="mzfeatures"> | 406 <output name="mzfeatures"> |
410 <assert_contents> | 407 <assert_contents> |
411 <has_text text="1212" /> | 408 <has_text text="100.642" /> |
412 <has_text text="1297" /> | 409 <has_text text="101.816297645089" /> |
413 <has_text text="1199" /> | 410 <has_text text="1.34687866193417" /> |
414 <has_text text="1298" /> | 411 <has_text text="6.43855724908388" /> |
415 <has_n_columns n="9" /> | 412 <has_n_columns n="9" /> |
416 <has_n_lines n="101" /> | 413 <has_n_lines n="101" /> |
417 </assert_contents> | 414 </assert_contents> |
418 </output> | 415 </output> |
419 </test> | 416 </test> |