Mercurial > repos > galaxyp > cardinal_segmentations

comparison test-data/ComBat_results_Example_processed_file.imzml @ 17:91f0f5922011 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 91e77c139cb3b7c6d67727dc39140dd79355fa0c
author galaxyp
date Thu, 04 Jul 2024 13:36:52 +0000
parents df2187f9013b
children
comparison
equal deleted inserted replaced
16:df2187f9013b 17:91f0f5922011
7 </cvList> 7 </cvList>
8 <fileDescription> 8 <fileDescription>
9 <fileContent> 9 <fileContent>
10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> 10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" />
11 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" /> 11 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" />
12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="82e7db90-df72-41f8-9ca7-7a19e966d5c1" /> 12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="bff0e5f4-5dea-4fc8-90c4-dd30b8464a7a" />
13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="259aa4b90129abb2f1f3107cf123f28d7c744f0c" /> 13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="964c9332a0878edc5a2fc6420627334a9a43d442" />
14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" /> 14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" />
15 </fileContent> 15 </fileContent>
16 </fileDescription> 16 </fileDescription>
17 <referenceableParamGroupList count="4"> 17 <referenceableParamGroupList count="4">
18 <referenceableParamGroup id="spectrum1"> 18 <referenceableParamGroup id="spectrum1">
40 <sample id="sample1" name="Sample1"> 40 <sample id="sample1" name="Sample1">
41 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" /> 41 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" />
42 </sample> 42 </sample>
43 </sampleList> 43 </sampleList>
44 <softwareList count="1"> 44 <softwareList count="1">
45 <software id="Cardinal" version="2.10.0"> 45 <software id="Cardinal" version="3.4.3">
46 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> 46 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
47 </software> 47 </software>
48 </softwareList> 48 </softwareList>
49 <scanSettingsList count="1"> 49 <scanSettingsList count="1">
50 <scanSettings id="scansettings1"> 50 <scanSettings id="scansettings1">
51 <cvParam cvRef="IMS" accession="IMS:1000401" name="top down" value="" />
52 <cvParam cvRef="IMS" accession="IMS:1000413" name="flyback" value="" />
53 <cvParam cvRef="IMS" accession="IMS:1000480" name="horizontal line scan" value="" />
54 <cvParam cvRef="IMS" accession="IMS:1000491" name="linescan left right" value="" />
55 <cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="3" /> 51 <cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="3" />
56 <cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="3" /> 52 <cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="3" />
57 <cvParam cvRef="IMS" accession="IMS:1000044" name="max dimension x" value="3" /> 53 <cvParam cvRef="IMS" accession="IMS:1000044" name="max dimension x" value="3" />
58 <cvParam cvRef="IMS" accession="IMS:1000045" name="max dimension y" value="3" /> 54 <cvParam cvRef="IMS" accession="IMS:1000045" name="max dimension y" value="3" />
59 <cvParam cvRef="IMS" accession="IMS:1000046" name="pixel size x" value="1.000000" /> 55 <cvParam cvRef="IMS" accession="IMS:1000046" name="pixel size x" value="1.000000" />
88 </scanList> 84 </scanList>
89 <binaryDataArrayList count="2"> 85 <binaryDataArrayList count="2">
90 <binaryDataArray encodedLength="0"> 86 <binaryDataArray encodedLength="0">
91 <referenceableParamGroupRef ref="mzArray" /> 87 <referenceableParamGroupRef ref="mzArray" />
92 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 88 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
93 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 89 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
94 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 90 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
95 <binary /> 91 <binary />
96 </binaryDataArray> 92 </binaryDataArray>
97 <binaryDataArray encodedLength="0"> 93 <binaryDataArray encodedLength="0">
98 <referenceableParamGroupRef ref="intensityArray" /> 94 <referenceableParamGroupRef ref="intensityArray" />
99 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="166372" /> 95 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="41608" />
100 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 96 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
101 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 97 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
102 <binary /> 98 <binary />
103 </binaryDataArray> 99 </binaryDataArray>
104 </binaryDataArrayList> 100 </binaryDataArrayList>
105 </spectrum> 101 </spectrum>
106 <spectrum id="Spectrum=2" defaultArrayLength="0" index="2"> 102 <spectrum id="Spectrum=2" defaultArrayLength="0" index="2">
117 </scanList> 113 </scanList>
118 <binaryDataArrayList count="2"> 114 <binaryDataArrayList count="2">
119 <binaryDataArray encodedLength="0"> 115 <binaryDataArray encodedLength="0">
120 <referenceableParamGroupRef ref="mzArray" /> 116 <referenceableParamGroupRef ref="mzArray" />
121 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 117 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
122 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 118 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
123 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 119 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
124 <binary /> 120 <binary />
125 </binaryDataArray> 121 </binaryDataArray>
126 <binaryDataArray encodedLength="0"> 122 <binaryDataArray encodedLength="0">
127 <referenceableParamGroupRef ref="intensityArray" /> 123 <referenceableParamGroupRef ref="intensityArray" />
128 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="332728" /> 124 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="83200" />
129 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 125 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
130 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 126 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
131 <binary /> 127 <binary />
132 </binaryDataArray> 128 </binaryDataArray>
133 </binaryDataArrayList> 129 </binaryDataArrayList>
134 </spectrum> 130 </spectrum>
135 <spectrum id="Spectrum=3" defaultArrayLength="0" index="3"> 131 <spectrum id="Spectrum=3" defaultArrayLength="0" index="3">
146 </scanList> 142 </scanList>
147 <binaryDataArrayList count="2"> 143 <binaryDataArrayList count="2">
148 <binaryDataArray encodedLength="0"> 144 <binaryDataArray encodedLength="0">
149 <referenceableParamGroupRef ref="mzArray" /> 145 <referenceableParamGroupRef ref="mzArray" />
150 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 146 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
151 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 147 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
152 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 148 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
153 <binary /> 149 <binary />
154 </binaryDataArray> 150 </binaryDataArray>
155 <binaryDataArray encodedLength="0"> 151 <binaryDataArray encodedLength="0">
156 <referenceableParamGroupRef ref="intensityArray" /> 152 <referenceableParamGroupRef ref="intensityArray" />
157 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="499084" /> 153 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="124792" />
158 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 154 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
159 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 155 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
160 <binary /> 156 <binary />
161 </binaryDataArray> 157 </binaryDataArray>
162 </binaryDataArrayList> 158 </binaryDataArrayList>
163 </spectrum> 159 </spectrum>
164 <spectrum id="Spectrum=4" defaultArrayLength="0" index="4"> 160 <spectrum id="Spectrum=4" defaultArrayLength="0" index="4">
175 </scanList> 171 </scanList>
176 <binaryDataArrayList count="2"> 172 <binaryDataArrayList count="2">
177 <binaryDataArray encodedLength="0"> 173 <binaryDataArray encodedLength="0">
178 <referenceableParamGroupRef ref="mzArray" /> 174 <referenceableParamGroupRef ref="mzArray" />
179 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 175 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
180 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 176 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
181 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 177 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
182 <binary /> 178 <binary />
183 </binaryDataArray> 179 </binaryDataArray>
184 <binaryDataArray encodedLength="0"> 180 <binaryDataArray encodedLength="0">
185 <referenceableParamGroupRef ref="intensityArray" /> 181 <referenceableParamGroupRef ref="intensityArray" />
186 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="665440" /> 182 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="166384" />
187 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 183 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
188 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 184 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
189 <binary /> 185 <binary />
190 </binaryDataArray> 186 </binaryDataArray>
191 </binaryDataArrayList> 187 </binaryDataArrayList>
192 </spectrum> 188 </spectrum>
193 <spectrum id="Spectrum=5" defaultArrayLength="0" index="5"> 189 <spectrum id="Spectrum=5" defaultArrayLength="0" index="5">
204 </scanList> 200 </scanList>
205 <binaryDataArrayList count="2"> 201 <binaryDataArrayList count="2">
206 <binaryDataArray encodedLength="0"> 202 <binaryDataArray encodedLength="0">
207 <referenceableParamGroupRef ref="mzArray" /> 203 <referenceableParamGroupRef ref="mzArray" />
208 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 204 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
209 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 205 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
210 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 206 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
211 <binary /> 207 <binary />
212 </binaryDataArray> 208 </binaryDataArray>
213 <binaryDataArray encodedLength="0"> 209 <binaryDataArray encodedLength="0">
214 <referenceableParamGroupRef ref="intensityArray" /> 210 <referenceableParamGroupRef ref="intensityArray" />
215 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="831796" /> 211 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="207976" />
216 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 212 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
217 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 213 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
218 <binary /> 214 <binary />
219 </binaryDataArray> 215 </binaryDataArray>
220 </binaryDataArrayList> 216 </binaryDataArrayList>
221 </spectrum> 217 </spectrum>
222 <spectrum id="Spectrum=6" defaultArrayLength="0" index="6"> 218 <spectrum id="Spectrum=6" defaultArrayLength="0" index="6">
233 </scanList> 229 </scanList>
234 <binaryDataArrayList count="2"> 230 <binaryDataArrayList count="2">
235 <binaryDataArray encodedLength="0"> 231 <binaryDataArray encodedLength="0">
236 <referenceableParamGroupRef ref="mzArray" /> 232 <referenceableParamGroupRef ref="mzArray" />
237 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 233 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
238 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 234 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
239 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 235 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
240 <binary /> 236 <binary />
241 </binaryDataArray> 237 </binaryDataArray>
242 <binaryDataArray encodedLength="0"> 238 <binaryDataArray encodedLength="0">
243 <referenceableParamGroupRef ref="intensityArray" /> 239 <referenceableParamGroupRef ref="intensityArray" />
244 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="998152" /> 240 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="249568" />
245 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 241 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
246 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 242 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
247 <binary /> 243 <binary />
248 </binaryDataArray> 244 </binaryDataArray>
249 </binaryDataArrayList> 245 </binaryDataArrayList>
250 </spectrum> 246 </spectrum>
251 <spectrum id="Spectrum=7" defaultArrayLength="0" index="7"> 247 <spectrum id="Spectrum=7" defaultArrayLength="0" index="7">
262 </scanList> 258 </scanList>
263 <binaryDataArrayList count="2"> 259 <binaryDataArrayList count="2">
264 <binaryDataArray encodedLength="0"> 260 <binaryDataArray encodedLength="0">
265 <referenceableParamGroupRef ref="mzArray" /> 261 <referenceableParamGroupRef ref="mzArray" />
266 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 262 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
267 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 263 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
268 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 264 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
269 <binary /> 265 <binary />
270 </binaryDataArray> 266 </binaryDataArray>
271 <binaryDataArray encodedLength="0"> 267 <binaryDataArray encodedLength="0">
272 <referenceableParamGroupRef ref="intensityArray" /> 268 <referenceableParamGroupRef ref="intensityArray" />
273 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="1164508" /> 269 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="291160" />
274 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 270 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
275 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 271 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
276 <binary /> 272 <binary />
277 </binaryDataArray> 273 </binaryDataArray>
278 </binaryDataArrayList> 274 </binaryDataArrayList>
279 </spectrum> 275 </spectrum>
280 <spectrum id="Spectrum=8" defaultArrayLength="0" index="8"> 276 <spectrum id="Spectrum=8" defaultArrayLength="0" index="8">
291 </scanList> 287 </scanList>
292 <binaryDataArrayList count="2"> 288 <binaryDataArrayList count="2">
293 <binaryDataArray encodedLength="0"> 289 <binaryDataArray encodedLength="0">
294 <referenceableParamGroupRef ref="mzArray" /> 290 <referenceableParamGroupRef ref="mzArray" />
295 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 291 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
296 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 292 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
297 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 293 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
298 <binary /> 294 <binary />
299 </binaryDataArray> 295 </binaryDataArray>
300 <binaryDataArray encodedLength="0"> 296 <binaryDataArray encodedLength="0">
301 <referenceableParamGroupRef ref="intensityArray" /> 297 <referenceableParamGroupRef ref="intensityArray" />
302 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="1330864" /> 298 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="332752" />
303 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 299 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
304 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 300 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
305 <binary /> 301 <binary />
306 </binaryDataArray> 302 </binaryDataArray>
307 </binaryDataArrayList> 303 </binaryDataArrayList>
308 </spectrum> 304 </spectrum>
309 <spectrum id="Spectrum=9" defaultArrayLength="0" index="9"> 305 <spectrum id="Spectrum=9" defaultArrayLength="0" index="9">
320 </scanList> 316 </scanList>
321 <binaryDataArrayList count="2"> 317 <binaryDataArrayList count="2">
322 <binaryDataArray encodedLength="0"> 318 <binaryDataArray encodedLength="0">
323 <referenceableParamGroupRef ref="mzArray" /> 319 <referenceableParamGroupRef ref="mzArray" />
324 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> 320 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
325 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 321 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
326 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 322 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
327 <binary /> 323 <binary />
328 </binaryDataArray> 324 </binaryDataArray>
329 <binaryDataArray encodedLength="0"> 325 <binaryDataArray encodedLength="0">
330 <referenceableParamGroupRef ref="intensityArray" /> 326 <referenceableParamGroupRef ref="intensityArray" />
331 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="1497220" /> 327 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="374344" />
332 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="41589" /> 328 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="10398" />
333 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="166356" /> 329 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="41592" />
334 <binary /> 330 <binary />
335 </binaryDataArray> 331 </binaryDataArray>
336 </binaryDataArrayList> 332 </binaryDataArrayList>
337 </spectrum> 333 </spectrum>
338 </spectrumList> 334 </spectrumList>