Mercurial > repos > galaxyp > cardinal_segmentations

diff segmentation.xml @ 3:09b638ceee45 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 2c4a1a862900b4efbc30824cbcb798f835b168b2
author galaxyp
date Thu, 28 Feb 2019 09:23:26 -0500
parents 034885df9b09
children 9f7d1ec01767
line wrap: on
line diff
--- a/segmentation.xml	Fri Feb 15 10:16:36 2019 -0500
+++ b/segmentation.xml	Thu Feb 28 09:23:26 2019 -0500
@@ -33,6 +33,10 @@
 ## to make sure that processed files work as well: 
 iData(msidata) = iData(msidata)[]
 
+## remove duplicated coordinates
+print(paste0(sum(duplicated(coord(msidata))), " duplicated coordinates were removed"))
+msidata <- msidata[,!duplicated(coord(msidata))]
+
 ## count and print number of NAs, all methods are not compatible with NAs
 print(paste0("Number of NA in dataset: ", sum(is.na(spectra(msidata)[])), " - segmentation does not work with NA values"))