Mercurial > repos > galaxyp > cardinal_segmentations

diff test-data/preprocessing_results2.imzml @ 6:82f6c2f4332d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
author galaxyp
date Wed, 25 Mar 2020 05:43:05 -0400
parents 09b638ceee45
children b591450b3d1c
line wrap: on
line diff
--- a/test-data/preprocessing_results2.imzml	Fri Dec 13 13:52:13 2019 -0500
+++ b/test-data/preprocessing_results2.imzml	Wed Mar 25 05:43:05 2020 -0400
@@ -9,8 +9,8 @@
 		<fileContent>
 			<cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" />
 			<cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value="" />
-			<cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="{40F230A1-1893-4A8C-BAE2-A8BBEF24DB20}" />
-			<cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="417ADF38FBC4D0304A9B75B4C85799137846DD2F" />
+			<cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="e536d1e2-427b-4c5b-9743-8210ae52a564" />
+			<cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="7cea783e9d345946b874fc1f25d40ce90bffd2f9" />
 			<cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" />
 		</fileContent>
 	</fileDescription>
@@ -22,19 +22,18 @@
 		</referenceableParamGroup>
 		<referenceableParamGroup id="scan1">
 			<cvParam cvRef="MS" accession="MS:1000093" name="increasing m/z scan" value="" />
-			<cvParam cvRef="MS" accession="MS:1000095" name="linear" value="" />
 		</referenceableParamGroup>
 		<referenceableParamGroup id="mzArray">
 			<cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" />
 			<cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z" />
 			<cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" />
-			<cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="32-bit float" />
+			<cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="" />
 		</referenceableParamGroup>
 		<referenceableParamGroup id="intensityArray">
 			<cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" />
 			<cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of counts" />
 			<cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" />
-			<cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="32-bit float" />
+			<cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="" />
 		</referenceableParamGroup>
 	</referenceableParamGroupList>
 	<sampleList count="1">
@@ -43,18 +42,24 @@
 		</sample>
 	</sampleList>
 	<softwareList count="1">
-		<software id="Cardinal" version="1.12.1">
+		<software id="Cardinal" version="2.4.0">
 			<cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
 		</software>
 	</softwareList>
 	<scanSettingsList count="1">
 		<scanSettings id="scansettings1">
-			<cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="9" />
+			<cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="4" />
 			<cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="3" />
+			<cvParam cvRef="IMS" accession="IMS:1000044" name="max dimension x" value="9" />
+			<cvParam cvRef="IMS" accession="IMS:1000045" name="max dimension y" value="3" />
+			<cvParam cvRef="IMS" accession="IMS:1000046" name="pixel size x" value="1.000000" />
+			<cvParam cvRef="IMS" accession="IMS:1000047" name="pixel size y" value="1.000000" />
 		</scanSettings>
 	</scanSettingsList>
 	<instrumentConfigurationList count="1">
-		<instrumentConfiguration id="IC1" />
+		<instrumentConfiguration id="IC1">
+			<cvParam cvRef="MS" accession="MS:1000031" name="instrument model" />
+		</instrumentConfiguration>
 	</instrumentConfigurationList>
 	<dataProcessingList count="1">
 		<dataProcessing id="CardinalWriteImzML">
@@ -73,21 +78,23 @@
 						<referenceableParamGroupRef ref="scan1" />
 						<cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" />
 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" />
+						<userParam name="3DPositionX" value="1.000000" />
+						<userParam name="3DPositionY" value="1.000000" />
 					</scan>
 				</scanList>
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
 						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="4224" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="2892" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -100,21 +107,23 @@
 						<referenceableParamGroupRef ref="scan1" />
 						<cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" />
 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" />
+						<userParam name="3DPositionX" value="1.000000" />
+						<userParam name="3DPositionY" value="2.000000" />
 					</scan>
 				</scanList>
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
 						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="8432" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="5768" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -127,21 +136,23 @@
 						<referenceableParamGroupRef ref="scan1" />
 						<cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" />
 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" />
+						<userParam name="3DPositionX" value="1.000000" />
+						<userParam name="3DPositionY" value="3.000000" />
 					</scan>
 				</scanList>
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
 						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="12640" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="8644" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -154,21 +165,23 @@
 						<referenceableParamGroupRef ref="scan1" />
 						<cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3" />
 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" />
+						<userParam name="3DPositionX" value="3.000000" />
+						<userParam name="3DPositionY" value="1.000000" />
 					</scan>
 				</scanList>
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
 						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16848" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="11520" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -181,21 +194,23 @@
 						<referenceableParamGroupRef ref="scan1" />
 						<cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="4" />
 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" />
+						<userParam name="3DPositionX" value="4.000000" />
+						<userParam name="3DPositionY" value="1.000000" />
 					</scan>
 				</scanList>
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
 						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="21056" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="14396" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -208,21 +223,23 @@
 						<referenceableParamGroupRef ref="scan1" />
 						<cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3" />
 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" />
+						<userParam name="3DPositionX" value="3.000000" />
+						<userParam name="3DPositionY" value="2.000000" />
 					</scan>
 				</scanList>
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
 						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="25264" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="17272" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -235,21 +252,23 @@
 						<referenceableParamGroupRef ref="scan1" />
 						<cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="4" />
 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" />
+						<userParam name="3DPositionX" value="4.000000" />
+						<userParam name="3DPositionY" value="2.000000" />
 					</scan>
 				</scanList>
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
 						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="29472" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="20148" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -262,21 +281,23 @@
 						<referenceableParamGroupRef ref="scan1" />
 						<cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3" />
 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" />
+						<userParam name="3DPositionX" value="3.000000" />
+						<userParam name="3DPositionY" value="3.000000" />
 					</scan>
 				</scanList>
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
 						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="33680" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="23024" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -289,21 +310,23 @@
 						<referenceableParamGroupRef ref="scan1" />
 						<cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="4" />
 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" />
+						<userParam name="3DPositionX" value="4.000000" />
+						<userParam name="3DPositionY" value="3.000000" />
 					</scan>
 				</scanList>
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
 						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="37888" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="25900" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -316,21 +339,23 @@
 						<referenceableParamGroupRef ref="scan1" />
 						<cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="9" />
 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" />
+						<userParam name="3DPositionX" value="9.000000" />
+						<userParam name="3DPositionY" value="1.000000" />
 					</scan>
 				</scanList>
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
 						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="42096" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="28776" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -343,21 +368,23 @@
 						<referenceableParamGroupRef ref="scan1" />
 						<cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="9" />
 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" />
+						<userParam name="3DPositionX" value="9.000000" />
+						<userParam name="3DPositionY" value="2.000000" />
 					</scan>
 				</scanList>
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
 						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="46304" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="31652" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -370,21 +397,23 @@
 						<referenceableParamGroupRef ref="scan1" />
 						<cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="9" />
 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" />
+						<userParam name="3DPositionX" value="9.000000" />
+						<userParam name="3DPositionY" value="3.000000" />
 					</scan>
 				</scanList>
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
 						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="50512" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1052" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4208" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="34528" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="719" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2876" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>