Mercurial > repos > galaxyp > cardinal_single_ion_segmentation
comparison test-data/preprocessing_results1.imzml @ 2:db423b7bce78 draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 91e77c139cb3b7c6d67727dc39140dd79355fa0c
author | galaxyp |
---|---|
date | Thu, 04 Jul 2024 13:43:40 +0000 |
parents | 4cb6c83d3777 |
children |
comparison
equal
deleted
inserted
replaced
1:53a2f4fa6cd2 | 2:db423b7bce78 |
---|---|
7 </cvList> | 7 </cvList> |
8 <fileDescription> | 8 <fileDescription> |
9 <fileContent> | 9 <fileContent> |
10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> | 10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> |
11 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value="" /> | 11 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value="" /> |
12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="22bd3147-231d-4076-b6bd-67c1fa7c6ef3" /> | 12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="5780eca2-b73c-4fbe-a516-c23a5b0273d5" /> |
13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="831eba0fc850529d1351bcbb1baf779fe0773e1b" /> | 13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="0a57a2ec02cd6ac56ba0d77367107b3b42360d76" /> |
14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" /> | 14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" /> |
15 </fileContent> | 15 </fileContent> |
16 </fileDescription> | 16 </fileDescription> |
17 <referenceableParamGroupList count="4"> | 17 <referenceableParamGroupList count="4"> |
18 <referenceableParamGroup id="spectrum1"> | 18 <referenceableParamGroup id="spectrum1"> |
40 <sample id="sample1" name="Sample1"> | 40 <sample id="sample1" name="Sample1"> |
41 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" /> | 41 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" /> |
42 </sample> | 42 </sample> |
43 </sampleList> | 43 </sampleList> |
44 <softwareList count="1"> | 44 <softwareList count="1"> |
45 <software id="Cardinal" version="2.6.0"> | 45 <software id="Cardinal" version="3.4.3"> |
46 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> | 46 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> |
47 </software> | 47 </software> |
48 </softwareList> | 48 </softwareList> |
49 <scanSettingsList count="1"> | 49 <scanSettingsList count="1"> |
50 <scanSettings id="scansettings1"> | 50 <scanSettings id="scansettings1"> |
84 </scanList> | 84 </scanList> |
85 <binaryDataArrayList count="2"> | 85 <binaryDataArrayList count="2"> |
86 <binaryDataArray encodedLength="0"> | 86 <binaryDataArray encodedLength="0"> |
87 <referenceableParamGroupRef ref="mzArray" /> | 87 <referenceableParamGroupRef ref="mzArray" /> |
88 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> | 88 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
89 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 89 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
90 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 90 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
91 <binary /> | 91 <binary /> |
92 </binaryDataArray> | 92 </binaryDataArray> |
93 <binaryDataArray encodedLength="0"> | 93 <binaryDataArray encodedLength="0"> |
94 <referenceableParamGroupRef ref="intensityArray" /> | 94 <referenceableParamGroupRef ref="intensityArray" /> |
95 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="48" /> | 95 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="52" /> |
96 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 96 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
97 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 97 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
98 <binary /> | 98 <binary /> |
99 </binaryDataArray> | 99 </binaryDataArray> |
100 </binaryDataArrayList> | 100 </binaryDataArrayList> |
101 </spectrum> | 101 </spectrum> |
102 <spectrum id="Spectrum=2" defaultArrayLength="0" index="2"> | 102 <spectrum id="Spectrum=2" defaultArrayLength="0" index="2"> |
113 </scanList> | 113 </scanList> |
114 <binaryDataArrayList count="2"> | 114 <binaryDataArrayList count="2"> |
115 <binaryDataArray encodedLength="0"> | 115 <binaryDataArray encodedLength="0"> |
116 <referenceableParamGroupRef ref="mzArray" /> | 116 <referenceableParamGroupRef ref="mzArray" /> |
117 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> | 117 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
118 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 118 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
119 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 119 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
120 <binary /> | 120 <binary /> |
121 </binaryDataArray> | 121 </binaryDataArray> |
122 <binaryDataArray encodedLength="0"> | 122 <binaryDataArray encodedLength="0"> |
123 <referenceableParamGroupRef ref="intensityArray" /> | 123 <referenceableParamGroupRef ref="intensityArray" /> |
124 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="80" /> | 124 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="88" /> |
125 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 125 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
126 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 126 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
127 <binary /> | 127 <binary /> |
128 </binaryDataArray> | 128 </binaryDataArray> |
129 </binaryDataArrayList> | 129 </binaryDataArrayList> |
130 </spectrum> | 130 </spectrum> |
131 <spectrum id="Spectrum=3" defaultArrayLength="0" index="3"> | 131 <spectrum id="Spectrum=3" defaultArrayLength="0" index="3"> |
142 </scanList> | 142 </scanList> |
143 <binaryDataArrayList count="2"> | 143 <binaryDataArrayList count="2"> |
144 <binaryDataArray encodedLength="0"> | 144 <binaryDataArray encodedLength="0"> |
145 <referenceableParamGroupRef ref="mzArray" /> | 145 <referenceableParamGroupRef ref="mzArray" /> |
146 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> | 146 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
147 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 147 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
148 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 148 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
149 <binary /> | 149 <binary /> |
150 </binaryDataArray> | 150 </binaryDataArray> |
151 <binaryDataArray encodedLength="0"> | 151 <binaryDataArray encodedLength="0"> |
152 <referenceableParamGroupRef ref="intensityArray" /> | 152 <referenceableParamGroupRef ref="intensityArray" /> |
153 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="112" /> | 153 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="124" /> |
154 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 154 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
155 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 155 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
156 <binary /> | 156 <binary /> |
157 </binaryDataArray> | 157 </binaryDataArray> |
158 </binaryDataArrayList> | 158 </binaryDataArrayList> |
159 </spectrum> | 159 </spectrum> |
160 <spectrum id="Spectrum=4" defaultArrayLength="0" index="4"> | 160 <spectrum id="Spectrum=4" defaultArrayLength="0" index="4"> |
171 </scanList> | 171 </scanList> |
172 <binaryDataArrayList count="2"> | 172 <binaryDataArrayList count="2"> |
173 <binaryDataArray encodedLength="0"> | 173 <binaryDataArray encodedLength="0"> |
174 <referenceableParamGroupRef ref="mzArray" /> | 174 <referenceableParamGroupRef ref="mzArray" /> |
175 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> | 175 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
176 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 176 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
177 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 177 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
178 <binary /> | 178 <binary /> |
179 </binaryDataArray> | 179 </binaryDataArray> |
180 <binaryDataArray encodedLength="0"> | 180 <binaryDataArray encodedLength="0"> |
181 <referenceableParamGroupRef ref="intensityArray" /> | 181 <referenceableParamGroupRef ref="intensityArray" /> |
182 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="144" /> | 182 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="160" /> |
183 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 183 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
184 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 184 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
185 <binary /> | 185 <binary /> |
186 </binaryDataArray> | 186 </binaryDataArray> |
187 </binaryDataArrayList> | 187 </binaryDataArrayList> |
188 </spectrum> | 188 </spectrum> |
189 <spectrum id="Spectrum=5" defaultArrayLength="0" index="5"> | 189 <spectrum id="Spectrum=5" defaultArrayLength="0" index="5"> |
200 </scanList> | 200 </scanList> |
201 <binaryDataArrayList count="2"> | 201 <binaryDataArrayList count="2"> |
202 <binaryDataArray encodedLength="0"> | 202 <binaryDataArray encodedLength="0"> |
203 <referenceableParamGroupRef ref="mzArray" /> | 203 <referenceableParamGroupRef ref="mzArray" /> |
204 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> | 204 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
205 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 205 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
206 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 206 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
207 <binary /> | 207 <binary /> |
208 </binaryDataArray> | 208 </binaryDataArray> |
209 <binaryDataArray encodedLength="0"> | 209 <binaryDataArray encodedLength="0"> |
210 <referenceableParamGroupRef ref="intensityArray" /> | 210 <referenceableParamGroupRef ref="intensityArray" /> |
211 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="176" /> | 211 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="196" /> |
212 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 212 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
213 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 213 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
214 <binary /> | 214 <binary /> |
215 </binaryDataArray> | 215 </binaryDataArray> |
216 </binaryDataArrayList> | 216 </binaryDataArrayList> |
217 </spectrum> | 217 </spectrum> |
218 <spectrum id="Spectrum=6" defaultArrayLength="0" index="6"> | 218 <spectrum id="Spectrum=6" defaultArrayLength="0" index="6"> |
229 </scanList> | 229 </scanList> |
230 <binaryDataArrayList count="2"> | 230 <binaryDataArrayList count="2"> |
231 <binaryDataArray encodedLength="0"> | 231 <binaryDataArray encodedLength="0"> |
232 <referenceableParamGroupRef ref="mzArray" /> | 232 <referenceableParamGroupRef ref="mzArray" /> |
233 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> | 233 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
234 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 234 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
235 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 235 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
236 <binary /> | 236 <binary /> |
237 </binaryDataArray> | 237 </binaryDataArray> |
238 <binaryDataArray encodedLength="0"> | 238 <binaryDataArray encodedLength="0"> |
239 <referenceableParamGroupRef ref="intensityArray" /> | 239 <referenceableParamGroupRef ref="intensityArray" /> |
240 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="208" /> | 240 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="232" /> |
241 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 241 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
242 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 242 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
243 <binary /> | 243 <binary /> |
244 </binaryDataArray> | 244 </binaryDataArray> |
245 </binaryDataArrayList> | 245 </binaryDataArrayList> |
246 </spectrum> | 246 </spectrum> |
247 <spectrum id="Spectrum=7" defaultArrayLength="0" index="7"> | 247 <spectrum id="Spectrum=7" defaultArrayLength="0" index="7"> |
258 </scanList> | 258 </scanList> |
259 <binaryDataArrayList count="2"> | 259 <binaryDataArrayList count="2"> |
260 <binaryDataArray encodedLength="0"> | 260 <binaryDataArray encodedLength="0"> |
261 <referenceableParamGroupRef ref="mzArray" /> | 261 <referenceableParamGroupRef ref="mzArray" /> |
262 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> | 262 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
263 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 263 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
264 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 264 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
265 <binary /> | 265 <binary /> |
266 </binaryDataArray> | 266 </binaryDataArray> |
267 <binaryDataArray encodedLength="0"> | 267 <binaryDataArray encodedLength="0"> |
268 <referenceableParamGroupRef ref="intensityArray" /> | 268 <referenceableParamGroupRef ref="intensityArray" /> |
269 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="240" /> | 269 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="268" /> |
270 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 270 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
271 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 271 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
272 <binary /> | 272 <binary /> |
273 </binaryDataArray> | 273 </binaryDataArray> |
274 </binaryDataArrayList> | 274 </binaryDataArrayList> |
275 </spectrum> | 275 </spectrum> |
276 <spectrum id="Spectrum=8" defaultArrayLength="0" index="8"> | 276 <spectrum id="Spectrum=8" defaultArrayLength="0" index="8"> |
287 </scanList> | 287 </scanList> |
288 <binaryDataArrayList count="2"> | 288 <binaryDataArrayList count="2"> |
289 <binaryDataArray encodedLength="0"> | 289 <binaryDataArray encodedLength="0"> |
290 <referenceableParamGroupRef ref="mzArray" /> | 290 <referenceableParamGroupRef ref="mzArray" /> |
291 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> | 291 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
292 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 292 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
293 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 293 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
294 <binary /> | 294 <binary /> |
295 </binaryDataArray> | 295 </binaryDataArray> |
296 <binaryDataArray encodedLength="0"> | 296 <binaryDataArray encodedLength="0"> |
297 <referenceableParamGroupRef ref="intensityArray" /> | 297 <referenceableParamGroupRef ref="intensityArray" /> |
298 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="272" /> | 298 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="304" /> |
299 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 299 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
300 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 300 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
301 <binary /> | 301 <binary /> |
302 </binaryDataArray> | 302 </binaryDataArray> |
303 </binaryDataArrayList> | 303 </binaryDataArrayList> |
304 </spectrum> | 304 </spectrum> |
305 <spectrum id="Spectrum=9" defaultArrayLength="0" index="9"> | 305 <spectrum id="Spectrum=9" defaultArrayLength="0" index="9"> |
316 </scanList> | 316 </scanList> |
317 <binaryDataArrayList count="2"> | 317 <binaryDataArrayList count="2"> |
318 <binaryDataArray encodedLength="0"> | 318 <binaryDataArray encodedLength="0"> |
319 <referenceableParamGroupRef ref="mzArray" /> | 319 <referenceableParamGroupRef ref="mzArray" /> |
320 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> | 320 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
321 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 321 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
322 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 322 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
323 <binary /> | 323 <binary /> |
324 </binaryDataArray> | 324 </binaryDataArray> |
325 <binaryDataArray encodedLength="0"> | 325 <binaryDataArray encodedLength="0"> |
326 <referenceableParamGroupRef ref="intensityArray" /> | 326 <referenceableParamGroupRef ref="intensityArray" /> |
327 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="304" /> | 327 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="340" /> |
328 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" /> | 328 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="9" /> |
329 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" /> | 329 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="36" /> |
330 <binary /> | 330 <binary /> |
331 </binaryDataArray> | 331 </binaryDataArray> |
332 </binaryDataArrayList> | 332 </binaryDataArrayList> |
333 </spectrum> | 333 </spectrum> |
334 </spectrumList> | 334 </spectrumList> |