diff test-data/preprocessing_results1.imzml @ 6:043f9c91f686 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
author galaxyp
date Wed, 25 Mar 2020 05:53:20 -0400
parents 58c4aef16eb0
children ebb7de263d49
line wrap: on
line diff
--- a/test-data/preprocessing_results1.imzml	Fri Dec 13 13:52:57 2019 -0500
+++ b/test-data/preprocessing_results1.imzml	Wed Mar 25 05:53:20 2020 -0400
@@ -9,8 +9,8 @@
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 			<cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value="" />
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+			<cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="722d404b-4188-40b4-a3b2-3764ebbdecad" />
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@@ -22,19 +22,18 @@
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 			<cvParam cvRef="MS" accession="MS:1000093" name="increasing m/z scan" value="" />
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 		</referenceableParamGroup>
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 			<cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z" />
 			<cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" />
-			<cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="32-bit float" />
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 			<cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" />
-			<cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="32-bit float" />
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 	<sampleList count="1">
@@ -43,7 +42,7 @@
 		</sample>
 	</sampleList>
 	<softwareList count="1">
-		<software id="Cardinal" version="1.12.1">
+		<software id="Cardinal" version="2.4.0">
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@@ -51,10 +50,16 @@
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 			<cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="3" />
+			<cvParam cvRef="IMS" accession="IMS:1000044" name="max dimension x" value="3" />
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 		</scanSettings>
 	</scanSettingsList>
 	<instrumentConfigurationList count="1">
-		<instrumentConfiguration id="IC1" />
+		<instrumentConfiguration id="IC1">
+			<cvParam cvRef="MS" accession="MS:1000031" name="instrument model" />
+		</instrumentConfiguration>
 	</instrumentConfigurationList>
 	<dataProcessingList count="1">
 		<dataProcessing id="CardinalWriteImzML">
@@ -73,21 +78,23 @@
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+						<userParam name="3DPositionX" value="1.000000" />
+						<userParam name="3DPositionY" value="1.000000" />
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 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" />
+						<userParam name="3DPositionX" value="2.000000" />
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-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="8" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="5" />
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@@ -127,21 +136,23 @@
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 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" />
+						<userParam name="3DPositionX" value="3.000000" />
+						<userParam name="3DPositionY" value="1.000000" />
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-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="8" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="5" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="20" />
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+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="5" />
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 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" />
+						<userParam name="3DPositionX" value="1.000000" />
+						<userParam name="3DPositionY" value="2.000000" />
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-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="8" />
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@@ -181,21 +194,23 @@
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 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" />
+						<userParam name="3DPositionX" value="2.000000" />
+						<userParam name="3DPositionY" value="2.000000" />
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-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="8" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="5" />
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+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="5" />
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@@ -208,21 +223,23 @@
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 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" />
+						<userParam name="3DPositionX" value="3.000000" />
+						<userParam name="3DPositionY" value="2.000000" />
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-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="8" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="5" />
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@@ -235,21 +252,23 @@
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 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" />
+						<userParam name="3DPositionX" value="1.000000" />
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-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="8" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="5" />
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-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="8" />
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@@ -262,21 +281,23 @@
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 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" />
+						<userParam name="3DPositionX" value="2.000000" />
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-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="8" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="5" />
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 						<cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" />
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