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directory /test-data/ @ 17:d2483487e077 draft

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file 112_annotation_output.tabular 596 -rw-r--r--
file 112_auto_combined.ibd 537552 -rw-r--r--
file 112_auto_combined.imzml 27497 -rw-r--r--
file 112_auto_combined.imzml.txt 118 -rw-r--r--
file 112_auto_combined_QC.pdf 8009 -rw-r--r--
file 123_annotation.ibd 436764 -rw-r--r--
file 123_annotation.imzml 21166 -rw-r--r--
file 123_annotation.tabular 248 -rw-r--r--
file 123_annotation_output.tabular 332 -rw-r--r--
file 123_auto_combined.imzml.txt 118 -rw-r--r--
file 123_combine.rdata 255623 -rw-r--r--
file 123_combined.RData 255526 -rw-r--r--
file 123_combined.ibd 436764 -rw-r--r--
file 123_combined.imzml 22855 -rw-r--r--
file 123_combined.imzml.txt 118 -rw-r--r--
file 123_combined_QC.pdf 7948 -rw-r--r--
file 123_combined_auto.ibd 436764 -rw-r--r--
file 123_combined_auto.imzml 22860 -rw-r--r--
file 123_combined_auto.imzml.txt 118 -rw-r--r--
file 123_combined_auto.pdf 6077 -rw-r--r--
file 123_combined_auto.tabular 258 -rw-r--r--
file 123_combined_picked.rdata 46595 -rw-r--r--
file 123_combined_picked2.rdata 22614 -rw-r--r--
file 12_annotation_output.tabular 344 -rw-r--r--
file 12_combined.ibd 335976 -rw-r--r--
file 12_combined.imzml 18225 -rw-r--r--
file 12_combined.imzml.txt 118 -rw-r--r--
file 12_combined_QC.pdf 7920 -rw-r--r--
file 2123_annotation_output.tabular 421 -rw-r--r--
file 2123_auto_combined.ibd 638340 -rw-r--r--
file 2123_auto_combined.imzml 32132 -rw-r--r--
file 2123_auto_combined.imzml.txt 118 -rw-r--r--
file 2123_auto_combined_QC.pdf 6001 -rw-r--r--
file 3_files_combined.RData 255563 -rw-r--r--
file Analyze75.hdr 384 -rw-r--r--
file Analyze75.img 801684 -rw-r--r--
file Analyze75.t2m 178152 -rw-r--r--
file ComBat_results_Example_processed_file.ibd 1663576 -rw-r--r--
file ComBat_results_Example_processed_file.imzml 18593 -rw-r--r--
file ComBat_results_Example_processed_file.imzml.txt 129 -rw-r--r--
file ComBat_results_Example_processed_file_preprocessing.pdf 376155 -rw-r--r--
file Combat_40pixel.ibd 63648 -rwxr-xr-x
file Combat_40pixel.imzML 66386 -rwxr-xr-x
file DGMM_annotations.tabular 4135 -rw-r--r--
file Example_Continuous.ibd 47976 -rw-r--r--
file Example_Continuous.imzML 16845 -rw-r--r--
file Example_Processed.ibd 604744 -rw-r--r--
file Example_Processed.imzML 23929 -rw-r--r--
file Example_processed_ComBat_annotation.tabular 204 -rw-r--r--
file Heatmaps_LM8_file16.pdf 5611 -rw-r--r--
file Heatmaps_analyze75.pdf 9184 -rw-r--r--
file Heatmaps_imzml.pdf 6988 -rw-r--r--
file Heatmaps_processed.pdf 14258 -rw-r--r--
file Heatmaps_rdata.pdf 7024 -rw-r--r--
file Plot_analyze75.pdf 34630 -rw-r--r--
file Plot_analyze75_allpixels.pdf 15320 -rw-r--r--
file Plot_imzml.pdf 34904 -rw-r--r--
file Plot_picked.pdf 7970 -rw-r--r--
file Plot_processed.pdf 10778 -rw-r--r--
file Plot_rdata.pdf 36754 -rw-r--r--
file QC_analyze75.pdf 512202 -rw-r--r--
file QC_empty_spectra.pdf 5443 -rw-r--r--
file QC_imzml.pdf 687502 -rw-r--r--
file QC_imzml_shortreport.pdf 34781 -rw-r--r--
file QC_rdata.pdf 1375787 -rw-r--r--
file analyze75.svg 1601 -rw-r--r--
file analyze75_filtered2.pdf 7151 -rw-r--r--
file annotation_40pixel.tabular 1930 -rwxr-xr-x
file annotations.tabular 188 -rw-r--r--
file annotations_file1.tabular 188 -rw-r--r--
file annotations_file2.tabular 188 -rw-r--r--
file annotations_file3.tabular 206 -rw-r--r--
file annotations_rdata.tabular 160 -rw-r--r--
file centroids_proc.pdf 800202 -rw-r--r--
file centroids_rdata.pdf 132629 -rw-r--r--
file classes_proc.tabular 267 -rw-r--r--
file classes_ssc.tabular 191 -rw-r--r--
file cluster_skm.RData 352954 -rw-r--r--
file cluster_skm.tabular 301 -rw-r--r--
file coloc1.pdf 49133 -rw-r--r--
file coloc2.pdf 27027 -rw-r--r--
file coloc3.pdf 25332 -rw-r--r--
file coloc_table1.tabular 454 -rw-r--r--
file coloc_table2.tabular 277 -rw-r--r--
file coloc_table3.tabular 1298 -rw-r--r--
file dgmm_summary1.tabular 277 -rw-r--r--
file dgmm_summary2.tabular 302 -rw-r--r--
file dgmm_test1.pdf 26524 -rw-r--r--
file dgmm_test2.RData 100844 -rw-r--r--
file dgmm_test2.pdf 26657 -rw-r--r--
file empty_spectra.rdata 156496 -rw-r--r--
file estimates_r1_k6_mz1135.93347167969.tabular 154 -rw-r--r--
file estimates_r2_k10_mz1200.46533203125.tabular 231 -rw-r--r--
file features_out1.tabular 123166 -rw-r--r--
file features_out3.tabular 123166 -rw-r--r--
file features_out4.tabular 969787 -rw-r--r--
file features_test1.tabular 0 -rw-r--r--
file features_test2.tabular 397014 -rw-r--r--
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file features_test6.tabular 313999 -rw-r--r--
file features_test7.tabular 372004 -rw-r--r--
file featuresofinterest5.tabular 399 -rw-r--r--
file imzml_filtered3.pdf 7439 -rw-r--r--
file imzml_filtered4.pdf 7212 -rw-r--r--
file imzml_filtered5.pdf 7453 -rw-r--r--
file imzml_filtered8.pdf 7505 -rw-r--r--
file inputcalibrantfile1.tabular 18 -rwxr-xr-x
file inputcalibrantfile2.txt 39 -rwxr-xr-x
file inputpeptides.tabular 34 -rw-r--r--
file inputpeptides2.tabular 27 -rw-r--r--
file inputpixels_2column.tabular 37 -rw-r--r--
file int_matrix1.tabular 92687 -rw-r--r--
file int_matrix3.tabular 92687 -rw-r--r--
file kmeans_analyze.pdf 120372 -rw-r--r--
file mean_out2.tabular 207033 -rw-r--r--
file msidata_1.RData 115643 -rw-r--r--
file msidata_2.RData 169058 -rw-r--r--
file msidata_3.RData 122067 -rw-r--r--
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file out3.imzml 8958 -rw-r--r--
file out3.imzml.txt 113 -rw-r--r--
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file out8.ibd 248824 -rw-r--r--
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file out8.imzml.txt 118 -rw-r--r--
file pca_imzml.pdf 45068 -rw-r--r--
file picked.ibd 157984 -rw-r--r--
file picked.imzml 35012 -rw-r--r--
file picked.imzml.txt 118 -rw-r--r--
file picked.tabular 205 -rw-r--r--
file picked_QC.pdf 5998 -rw-r--r--
file pixel_annotation_file1.tabular 300 -rw-r--r--
file pixel_out2.tabular 596 -rw-r--r--
file pixel_out3.tabular 552 -rw-r--r--
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file pixels_test1.tabular 0 -rw-r--r--
file pixels_test2.tabular 372 -rw-r--r--
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file preprocessed.RData 81451 -rw-r--r--
file preprocessing_results1.ibd 336 -rw-r--r--
file preprocessing_results1.imzml 18092 -rw-r--r--
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file preprocessing_results1.pdf 81421 -rw-r--r--
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file preprocessing_results5.imzml 18569 -rw-r--r--
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file preprocessing_results5.pdf 404223 -rw-r--r--
file preprocessing_results_combat_40pixel.ibd 63648 -rw-r--r--
file preprocessing_results_combat_40pixel.imzml 66384 -rw-r--r--
file preprocessing_results_combat_40pixel.imzml.txt 124 -rw-r--r--
file preprocessing_results_combat_40pixel.pdf 35786 -rw-r--r--
file probability_r1_k6_mz1023.70806884766.tabular 28055 -rw-r--r--
file probability_r2_k10_mz1135.93347167969.tabular 20150 -rw-r--r--
file random_factors.tabular 228 -rw-r--r--
file rdata_notfiltered.pdf 7203 -rw-r--r--
file scores_pca.tabular 291 -rw-r--r--
file sd_out2.tabular 225218 -rw-r--r--
file spatial_DGMM_input.ibd 16056 -rw-r--r--
file spatial_DGMM_input.imzML 618355 -rw-r--r--
file spectra_1_pixel.tabular 12 -rw-r--r--
file spectra_info_123_combi.txt 659 -rw-r--r--
file spectra_info_imzml.txt 479 -rw-r--r--
file tabular_LM8file16.tabular 45 -rw-r--r--
file tabular_analyze75.tabular 60 -rw-r--r--
file tabular_imzml.tabular 69 -rw-r--r--
file tabular_rdata.tabular 46 -rw-r--r--
file test1.pdf 16512 -rw-r--r--
file test2.pdf 77783 -rw-r--r--
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file testfile_squares.rdata 70844 -rw-r--r--
file toplabels_proc.tabular 2657 -rw-r--r--
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file toplabels_ssc.tabular 2737 -rw-r--r--
file xy_coordinates.tabular 30 -rw-r--r--
file xy_coordinates2.tabular 20 -rw-r--r--