# HG changeset patch
# User galaxyp
# Date 1576263177 18000
# Node ID f17b01ec5c225496ab3566f4cd07f3308d230294
# Parent 9b6b86e771c27f39fa5b0d97e5d88dc19e936e1d
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/112_annotation_output.tabular
--- a/test-data/112_annotation_output.tabular Fri Mar 22 08:17:34 2019 -0400
+++ b/test-data/112_annotation_output.tabular Fri Dec 13 13:52:57 2019 -0500
@@ -1,16 +1,16 @@
-x y sample_name file_name column_name NA.x NA.y NA
-1 1 msidata_1.RData file_one col1 NA NA NA
-1 2 msidata_1.RData file_one col1 NA NA NA
-1 3 msidata_1.RData file_one col1 NA NA NA
-10 1 123_combined.RData file_two col3 NA NA NA
-10 2 123_combined.RData file_two col3 NA NA NA
-10 3 123_combined.RData file_two col3 NA NA NA
-15 1 123_combined.RData file_three col3 NA NA NA
-15 2 123_combined.RData file_three col3 NA NA NA
-15 3 123_combined.RData file_three col3 NA NA NA
-7 1 123_combined.RData file_one col1 NA NA NA
-7 2 123_combined.RData file_one col1 NA NA NA
-7 3 123_combined.RData file_one col1 NA NA NA
-9 1 123_combined.RData file_two col2 NA NA NA
-9 2 123_combined.RData file_two col2 NA NA NA
-9 3 123_combined.RData file_two col2 NA NA NA
+x y sample_name file_name column_name
+1 1 msidata_1.RData file_one col1
+1 2 msidata_1.RData file_one col1
+1 3 msidata_1.RData file_one col1
+7 1 123_combined.RData file_one col1
+7 2 123_combined.RData file_one col1
+7 3 123_combined.RData file_one col1
+9 1 123_combined.RData file_two col2
+10 1 123_combined.RData file_two col3
+9 2 123_combined.RData file_two col2
+10 2 123_combined.RData file_two col3
+9 3 123_combined.RData file_two col2
+10 3 123_combined.RData file_two col3
+15 1 123_combined.RData file_three col3
+15 2 123_combined.RData file_three col3
+15 3 123_combined.RData file_three col3
diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/112_auto_combined.ibd
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/112_auto_combined.imzml
--- a/test-data/112_auto_combined.imzml Fri Mar 22 08:17:34 2019 -0400
+++ b/test-data/112_auto_combined.imzml Fri Dec 13 13:52:57 2019 -0500
@@ -9,8 +9,8 @@
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/112_auto_combined.imzml.txt
--- a/test-data/112_auto_combined.imzml.txt Fri Mar 22 08:17:34 2019 -0400
+++ b/test-data/112_auto_combined.imzml.txt Fri Dec 13 13:52:57 2019 -0500
@@ -1,4 +1,4 @@
imzML file:
total 556
--rw-r--r-- 1 meli meli 537552 Feb 12 12:25 ibd
--rw-r--r-- 1 meli meli 25466 Feb 12 12:25 imzml
+-rw-r--r-- 1 meli meli 537552 Dez 11 00:10 ibd
+-rw-r--r-- 1 meli meli 25811 Dez 11 00:10 imzml
diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/112_auto_combined_QC.pdf
Binary file test-data/112_auto_combined_QC.pdf has changed
diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/123_annotation_output.tabular
--- a/test-data/123_annotation_output.tabular Fri Mar 22 08:17:34 2019 -0400
+++ b/test-data/123_annotation_output.tabular Fri Dec 13 13:52:57 2019 -0500
@@ -1,13 +1,13 @@
-x y sample_name file_name column_name NA.x NA.y NA
-1 1 File1 file_one col1 NA NA NA
-1 2 File1 file_one col1 NA NA NA
-1 3 File1 file_one col1 NA NA NA
-3 1 File2 file_two col2 NA NA NA
-3 2 File2 file_two col2 NA NA NA
-3 3 File2 file_two col2 NA NA NA
-4 1 File2 file_two col3 NA NA NA
-4 2 File2 file_two col3 NA NA NA
-4 3 File2 file_two col3 NA NA NA
-9 1 File3 file_three col3 NA NA NA
-9 2 File3 file_three col3 NA NA NA
-9 3 File3 file_three col3 NA NA NA
+x y sample_name file_name column_name
+1 1 File1 file_one col1
+1 2 File1 file_one col1
+1 3 File1 file_one col1
+3 1 File2 file_two col2
+4 1 File2 file_two col3
+3 2 File2 file_two col2
+4 2 File2 file_two col3
+3 3 File2 file_two col2
+4 3 File2 file_two col3
+9 1 File3 file_three col3
+9 2 File3 file_three col3
+9 3 File3 file_three col3
diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/123_combine.rdata
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/123_combined.RData
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/123_combined.ibd
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/123_combined.imzml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/123_combined.imzml Fri Dec 13 13:52:57 2019 -0500
@@ -0,0 +1,399 @@
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/123_combined.imzml.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/123_combined.imzml.txt Fri Dec 13 13:52:57 2019 -0500
@@ -0,0 +1,4 @@
+imzML file:
+total 452
+-rw-r--r-- 1 meli meli 436764 Dez 11 00:02 ibd
+-rw-r--r-- 1 meli meli 21511 Dez 11 00:02 imzml
diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/123_combined_QC.pdf
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/123_combined_auto.ibd
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/123_combined_auto.imzml
--- a/test-data/123_combined_auto.imzml Fri Mar 22 08:17:34 2019 -0400
+++ b/test-data/123_combined_auto.imzml Fri Dec 13 13:52:57 2019 -0500
@@ -9,8 +9,8 @@
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/123_combined_auto.imzml.txt
--- a/test-data/123_combined_auto.imzml.txt Fri Mar 22 08:17:34 2019 -0400
+++ b/test-data/123_combined_auto.imzml.txt Fri Dec 13 13:52:57 2019 -0500
@@ -1,4 +1,4 @@
imzML file:
total 452
--rw-r--r-- 1 meli meli 436764 Feb 12 00:51 ibd
--rw-r--r-- 1 meli meli 21166 Feb 12 00:51 imzml
+-rw-r--r-- 1 meli meli 436764 Dez 11 00:05 ibd
+-rw-r--r-- 1 meli meli 21514 Dez 11 00:05 imzml
diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/123_combined_auto.pdf
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/123_combined_picked.rdata
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/123_combined_picked2.rdata
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/12_annotation_output.tabular
--- a/test-data/12_annotation_output.tabular Fri Mar 22 08:17:34 2019 -0400
+++ b/test-data/12_annotation_output.tabular Fri Dec 13 13:52:57 2019 -0500
@@ -1,10 +1,10 @@
-x y sample_name file_name column_name NA.x NA.y NA
-1 1 msidata_1.RData file_one col1 NA NA NA
-1 2 msidata_1.RData file_one col1 NA NA NA
-1 3 msidata_1.RData file_one col1 NA NA NA
-7 1 msidata_2.RData file_two col2 NA NA NA
-7 2 msidata_2.RData file_two col2 NA NA NA
-7 3 msidata_2.RData file_two col2 NA NA NA
-8 1 msidata_2.RData file_two col3 NA NA NA
-8 2 msidata_2.RData file_two col3 NA NA NA
-8 3 msidata_2.RData file_two col3 NA NA NA
+x y sample_name file_name column_name
+1 1 msidata_1.RData file_one col1
+1 2 msidata_1.RData file_one col1
+1 3 msidata_1.RData file_one col1
+7 1 msidata_2.RData file_two col2
+8 1 msidata_2.RData file_two col3
+7 2 msidata_2.RData file_two col2
+8 2 msidata_2.RData file_two col3
+7 3 msidata_2.RData file_two col2
+8 3 msidata_2.RData file_two col3
diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/12_combined.RData
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/12_combined.ibd
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/12_combined.imzml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/12_combined.imzml Fri Dec 13 13:52:57 2019 -0500
@@ -0,0 +1,318 @@
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/12_combined.imzml.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/12_combined.imzml.txt Fri Dec 13 13:52:57 2019 -0500
@@ -0,0 +1,4 @@
+imzML file:
+total 352
+-rw-r--r-- 1 meli meli 335976 Dez 11 00:07 ibd
+-rw-r--r-- 1 meli meli 17217 Dez 11 00:07 imzml
diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/12_combined_QC.pdf
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/2123_auto_combined.RData
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/2123_auto_combined.imzml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/2123_auto_combined.imzml Fri Dec 13 13:52:57 2019 -0500
@@ -0,0 +1,561 @@
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/2123_auto_combined.imzml.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/2123_auto_combined.imzml.txt Fri Dec 13 13:52:57 2019 -0500
@@ -0,0 +1,4 @@
+imzML file:
+total 656
+-rw-r--r-- 1 meli meli 638340 Dez 11 00:12 ibd
+-rw-r--r-- 1 meli meli 30107 Dez 11 00:12 imzml
diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/2123_auto_combined_QC.pdf
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/picked.ibd
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/picked.imzml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/picked.imzml Fri Dec 13 13:52:57 2019 -0500
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/picked.imzml.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/picked.imzml.txt Fri Dec 13 13:52:57 2019 -0500
@@ -0,0 +1,4 @@
+imzML file:
+total 192
+-rw-r--r-- 1 meli meli 157984 Dez 11 00:03 ibd
+-rw-r--r-- 1 meli meli 35012 Dez 11 00:03 imzml
diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/picked.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/picked.tabular Fri Dec 13 13:52:57 2019 -0500
@@ -0,0 +1,19 @@
+x y sample_name
+1 1 File1
+1 2 File1
+1 3 File1
+3 1 File1
+4 1 File1
+3 2 File1
+4 2 File1
+3 3 File1
+4 3 File1
+11 1 File2
+12 1 File2
+11 2 File2
+12 2 File2
+11 3 File2
+12 3 File2
+17 1 File2
+17 2 File2
+17 3 File2
diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/picked_QC.pdf
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diff -r 9b6b86e771c2 -r f17b01ec5c22 test-data/xy_coordinates2.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/xy_coordinates2.tabular Fri Dec 13 13:52:57 2019 -0500
@@ -0,0 +1,2 @@
+0 0 File1
+8 0 File2