Mercurial > repos > galaxyp > cravatool
comparison test-results/Variant_Non-coding.Result.tsv @ 0:83181dabeb90 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
| author | galaxyp |
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| date | Fri, 18 May 2018 13:25:29 -0400 |
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| -1:000000000000 | 0:83181dabeb90 |
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| 1 #Non-coding Variant Report | |
| 2 #2018-05-18 15:18:04.020642 | |
| 3 #CRAVAT version: hybrid | |
| 4 #Analysis done at http://www.cravat.us. | |
| 5 #Job Id: znylund_20180518_111800 | |
| 6 #Input file: _VCF_BEDintersect_on_data_65_and_data_6_.vcf | |
| 7 #This report shows analysis results at variant level. | |
| 8 #hg38 genomic. | |
| 9 #N/A | |
| 10 #For more information on CRAVAT, visit http://www.cravat.us. | |
| 11 | |
| 12 Input line ID Chromosome Position Strand Reference base(s) Alternate base(s) Sample ID HUGO symbol Sequence ontology Protein sequence change ClinVar COSMIC ID COSMIC variant count (tissue) Number of samples with variant dbSNP ESP6500 AF (average) gnomAD AF Total gnomAD AF African gnomAD AF American gnomAD AF Ashkenazi Jewish gnomAD AF East Asian gnomAD AF Finnish gnomAD AF Non-Finnish European gnomAD AF Other gnomAD AF South Asian GWAS NHLBI Key (GRASP) GWAS PMID (GRASP) GWAS Phenotype (GRASP) Protein 3D variant In TCGA Mutation Cluster ncRNA Class ncRNA Name Pseudogene Pseudogene Transcript Repeat Class Repeat Family Repeat Name TARGET 1000 Genomes AF UTR/Intron UTR/Intron Gene UTR/Intron All Transcript Phred VCF filters Zygosity Alternate reads Total reads Variant allele frequency VEST p-value VEST FDR CGL driver class | |
| 13 8 VAR524_unknown chr19 17205444 + T C unknown Non-Coding 1 rs2305763 0.0 0.510502431118 0.684095610205 0.693317422434 0.337748344371 0.795930949445 0.435243553009 0.393043827905 0.449691991786 0.629792 intron MYO9B ENST00000595618.5(intron),ENST00000594824.5(intron),ENST00000397274.6(intron) 206.198 . hom 14 7 2.0 |