Mercurial > repos > galaxyp > custom_pro_db

diff customProDB.R @ 5:a3a66063d460 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/custom_pro_db commit d4b5497065b853ed094aebc9e4185e9995c5e0e0
author galaxyp
date Wed, 01 Nov 2017 19:33:53 -0400
parents bc08158abf77
children 2c7df0077d28
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--- a/customProDB.R	Thu Jun 08 11:06:13 2017 -0400
+++ b/customProDB.R	Wed Nov 01 19:33:53 2017 -0400
@@ -100,9 +100,9 @@
     file.symlink(bai_file, paste(bamLink, ".bai", sep=""))
 
     # load customProDB from GitHub (NOTE: downloading the zip is faster than cloning the repo with git2r or devtools::install_github)
-    download.file("https://github.com/chambm/customProDB/archive/c57e5498392197bc598a18c26acb70d7530a921c.zip", "customProDB.zip", quiet=TRUE)
+    download.file("https://github.com/chambm/customProDB/archive/9db2223ef9932e50124b92d1bc49206af1f40fb3.zip", "customProDB.zip", quiet=TRUE)
     unzip("customProDB.zip")
-    devtools::load_all("customProDB-c57e5498392197bc598a18c26acb70d7530a921c")
+    devtools::load_all("customProDB-9db2223ef9932e50124b92d1bc49206af1f40fb3")
 
     easyRun(bamFile=bamLink, vcfFile=vcf_file, annotation_path=getwd(),
             rpkm_cutoff=rpkmCutoff, outfile_path=".", outfile_name="output",