Mercurial > repos > galaxyp > custom_pro_db

diff customProDB.R @ 4:bc08158abf77 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/custom_pro_db commit 2174137cf8a15deefed5910ffa152c4ce9c81af6
author galaxyp
date Thu, 08 Jun 2017 11:06:13 -0400
parents 2cba79e6037e
children a3a66063d460
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--- a/customProDB.R	Thu May 18 12:31:04 2017 -0400
+++ b/customProDB.R	Thu Jun 08 11:06:13 2017 -0400
@@ -100,9 +100,9 @@
     file.symlink(bai_file, paste(bamLink, ".bai", sep=""))
 
     # load customProDB from GitHub (NOTE: downloading the zip is faster than cloning the repo with git2r or devtools::install_github)
-    download.file("https://github.com/chambm/customProDB/archive/master.zip", "customProDB.zip", quiet=TRUE)
+    download.file("https://github.com/chambm/customProDB/archive/c57e5498392197bc598a18c26acb70d7530a921c.zip", "customProDB.zip", quiet=TRUE)
     unzip("customProDB.zip")
-    devtools::load_all("customProDB-master")
+    devtools::load_all("customProDB-c57e5498392197bc598a18c26acb70d7530a921c")
 
     easyRun(bamFile=bamLink, vcfFile=vcf_file, annotation_path=getwd(),
             rpkm_cutoff=rpkmCutoff, outfile_path=".", outfile_name="output",