Mercurial > repos > galaxyp > custom_pro_db
diff customProDB.R @ 6:2c7df0077d28 draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/custom_pro_db commit 380011a7d342f3c7a2780dfa841adca1f6df1d30
author | galaxyp |
---|---|
date | Fri, 22 Feb 2019 02:13:31 -0500 |
parents | a3a66063d460 |
children |
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--- a/customProDB.R Wed Nov 01 19:33:53 2017 -0400 +++ b/customProDB.R Fri Feb 22 02:13:31 2019 -0500 @@ -100,9 +100,9 @@ file.symlink(bai_file, paste(bamLink, ".bai", sep="")) # load customProDB from GitHub (NOTE: downloading the zip is faster than cloning the repo with git2r or devtools::install_github) - download.file("https://github.com/chambm/customProDB/archive/9db2223ef9932e50124b92d1bc49206af1f40fb3.zip", "customProDB.zip", quiet=TRUE) + download.file("https://github.com/chambm/customProDB/archive/13cbebf9e3f26507afbbb661c9e985da2fd0840a.zip", "customProDB.zip", quiet=TRUE) unzip("customProDB.zip") - devtools::load_all("customProDB-9db2223ef9932e50124b92d1bc49206af1f40fb3") + devtools::load_all("customProDB-13cbebf9e3f26507afbbb661c9e985da2fd0840a") easyRun(bamFile=bamLink, vcfFile=vcf_file, annotation_path=getwd(), rpkm_cutoff=rpkmCutoff, outfile_path=".", outfile_name="output",