# HG changeset patch
# User galaxyp
# Date 1509579233 14400
# Node ID a3a66063d460396dd4e413339560d815be57ead9
# Parent  bc08158abf7723bff9d5665d42b04907f659ad69
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/custom_pro_db commit d4b5497065b853ed094aebc9e4185e9995c5e0e0

diff -r bc08158abf77 -r a3a66063d460 customProDB.R
--- a/customProDB.R	Thu Jun 08 11:06:13 2017 -0400
+++ b/customProDB.R	Wed Nov 01 19:33:53 2017 -0400
@@ -100,9 +100,9 @@
     file.symlink(bai_file, paste(bamLink, ".bai", sep=""))
 
     # load customProDB from GitHub (NOTE: downloading the zip is faster than cloning the repo with git2r or devtools::install_github)
-    download.file("https://github.com/chambm/customProDB/archive/c57e5498392197bc598a18c26acb70d7530a921c.zip", "customProDB.zip", quiet=TRUE)
+    download.file("https://github.com/chambm/customProDB/archive/9db2223ef9932e50124b92d1bc49206af1f40fb3.zip", "customProDB.zip", quiet=TRUE)
     unzip("customProDB.zip")
-    devtools::load_all("customProDB-c57e5498392197bc598a18c26acb70d7530a921c")
+    devtools::load_all("customProDB-9db2223ef9932e50124b92d1bc49206af1f40fb3")
 
     easyRun(bamFile=bamLink, vcfFile=vcf_file, annotation_path=getwd(),
             rpkm_cutoff=rpkmCutoff, outfile_path=".", outfile_name="output",
diff -r bc08158abf77 -r a3a66063d460 test-data/hg19_genomic_mapping.sqlite
Binary file test-data/hg19_genomic_mapping.sqlite has changed
diff -r bc08158abf77 -r a3a66063d460 test-data/hg19_variant_annotation.rdata
Binary file test-data/hg19_variant_annotation.rdata has changed