Mercurial > repos > galaxyp > data_manager_eggnog_mapper

comparison data_manager/data_manager_eggnog.xml @ 0:6d8144eef202 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper_data_manager commit ba81f4bfe31157aa6b986e81d5e4405ae1372b3b"
author galaxyp
date Mon, 11 Nov 2019 11:49:16 -0500
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children 077cf0a99144
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-1:000000000000 0:6d8144eef202
1 <tool id="data_manager_eggnog" name="EggNOG DB Download" version="@VERSION@.1" tool_type="manage_data">
2 <description>eggnog data</description>
3 <macros>
4 <import>eggnog_macros.xml</import>
5 </macros>
6 <expand macro="requirements"/>
7 <expand macro="version_command"/>
8 <command detect_errors="exit_code"><![CDATA[
9 #import json, os
10 #set params = json.loads(open(str($out_file)).read())
11 #set install_path = $params['output_data'][0]['extra_files_path'].encode('ascii', 'replace')
12 @DOWNLOAD_CMD@
13 ]]></command>
14 <inputs>
15 <expand macro="data_manager_params"/>
16 </inputs>
17 <expand macro="data_manager_outputs"/>
18 <tests>
19 <expand macro="data_manager_test"/>
20 </tests>
21 <help><![CDATA[
22 This tool downloads eggnog data using download_eggnog_data.py
23 and populates the data tables: eggnog_mapper_db and eggnog_mapper_hmm_dbs.
24 The data is located at: http://eggnogdb.embl.de/download/emapperdb-4.5.1/
25 The optional eggNOG HMM databases: http://eggnogdb.embl.de/download/emapperdb-4.5.1/hmmdb_levels/
26 can vary from 1G to 80G in size.
27
28 This will install data relative to the galaxy_data_manager_data_path declared in config/galaxy.yml
29 in directory eggnog_data/<eggnog data version>/.
30 The eggnog version is queried from the downloaded SQlite eggnog.db from table version.
31 ]]></help>
32 <expand macro="citations"/>
33 </tool>