Mercurial > repos > galaxyp > data_manager_eggnog_mapper
diff data_manager/data_manager_eggnog.py @ 3:5a2ffc486246 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper_data_manager commit e45c15081260025e470d23975ef5a734d3f8fc66"
| author | galaxyp |
|---|---|
| date | Tue, 25 Jan 2022 13:50:50 +0000 |
| parents | 3d82020b1e3b |
| children |
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--- a/data_manager/data_manager_eggnog.py Fri Feb 19 18:53:40 2021 +0000 +++ b/data_manager/data_manager_eggnog.py Tue Jan 25 13:50:50 2022 +0000 @@ -42,13 +42,21 @@ data_table = 'eggnog_mapper_db_versioned' dm_dict['data_tables'][data_table]\ = dm_dict['data_tables'].get(data_table, []) - # Versionning is super confusing: + # DB versionning was super confusing for eggnog-mapper 2.0.x: # eggnog-mapper 1.* needed a db v4.5 (based on eggnog v4.5) - # eggnog-mapper 2.0 needs a db v2.0 (based on eggnog v5.0) - # db v4.5 are not compatible with eggnog-mapper 2.0 + # eggnog-mapper 2.x needed a db v2.0 (based on eggnog v5.0) + # (db v4.5 are not compatible with eggnog-mapper 2.0) + # Starting with eggnog-mapper 2.1.* db versioning looks better: 2.1.0 requires db v5.0.2 version = "2.0" if "4.5" in db_version: + # special case: eggnog-mapper 1.x version = "1.0" + elif db_version.startswith('2.'): + # special case: eggnog-mapper 2.0.x + version = "2.0" + else: + # normal case or eggno-mapper >= 2.1 + version = db_version data_table_entry = dict(value=db_version, name=db_version, path=args.install_path, version=version) dm_dict['data_tables'][data_table].append(data_table_entry)