Mercurial > repos > galaxyp > data_manager_eggnog_mapper_abspath
view data_manager/data_manager_eggnog.xml @ 3:b711f5b6bd44 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper_abspath commit fd234f7532b34a1b6ced0d3ac53a8f42348e23f7"
author | galaxyp |
---|---|
date | Fri, 19 Feb 2021 18:54:00 +0000 |
parents | 2aec8d30ff42 |
children | fcb8bdd124f4 |
line wrap: on
line source
<tool id="data_manager_eggnog_abspath" name="EggNOG DB Download" version="@VERSION@+galaxy1" tool_type="manage_data" profile="18.09"> <description>eggnog data to a specified directory</description> <macros> <import>eggnog_macros.xml</import> </macros> <expand macro="requirements"/> <expand macro="version_command"/> <command detect_errors="exit_code"><![CDATA[ #set $install_path = $target_path @DOWNLOAD_CMD@ ]]></command> <inputs> <param name="target_path" type="text" value="" label="Download Destination" help="Full path to where the eggnod data should be installed."> <validator type="regex" message="Must be an absolute path">^/.*$</validator> </param> <expand macro="data_manager_params"/> </inputs> <expand macro="data_manager_outputs"/> <tests> <expand macro="data_manager_test"> <param name="target_path" value="/tmp" /> <!-- Not used in test mode --> </expand> </tests> <help><![CDATA[ This tool downloads eggnog data using download_eggnog_data.py and populates the data tables: eggnog_mapper_db_versioned. The data is located at: http://eggnog5.embl.de/download/emapperdb-5.0.0/ can vary from 1G to 80G in size. The data will be downloaded to the specified directory. You should not mix eggnog data versions in the same directory. ]]></help> <expand macro="citations"/> </tool>