# HG changeset patch
# User galaxyp
# Date 1609359177 0
# Node ID fbbbf8c145fcbe7d08c47f5774e061dc7cf306f5

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/dialignr commit 8dd046346db8261c462e2f3f5b4ff7f2433348df"

diff -r 000000000000 -r fbbbf8c145fc dialignr.R
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/dialignr.R	Wed Dec 30 20:12:57 2020 +0000
@@ -0,0 +1,54 @@
+library(DIAlignR)
+
+## Parse command line arguments
+args <- commandArgs(trailingOnly = TRUE)
+
+hh <- paste(unlist(args), collapse = " ")
+listoptions <- unlist(strsplit(hh, "--"))[-1]
+options.args <- sapply(listoptions, function(x) {
+                  unlist(strsplit(x, " "))[-1]
+                })
+options.names <- sapply(listoptions, function(x) {
+                  option <- unlist(strsplit(x, " "))[1]
+                })
+names(options.args) <- unlist(options.names)
+##
+
+data_path <- "./data/"
+runs_file_path <- "./runs.txt"
+
+runs <- readLines(runs_file_path)
+
+alignTargetedRuns(dataPath = data_path,
+                  outFile = "alignedTargetedRuns.csv",
+                  runs = runs,
+                  oswMerged = as.logical(options.args["oswMerged"]),
+                  maxFdrQuery = as.numeric(options.args["maxFdrQuery"]),
+                  XICfilter = options.args["XICfilter"],
+                  polyOrd = as.integer(options.args["polyOrd"]),
+                  kernelLen = as.integer(options.args["kernelLen"]),
+                  globalAlignment = options.args["globalAlignment"],
+                  globalAlignmentFdr = as.numeric(options.args["globalAlignmentFdr"]),
+                  globalAlignmentSpan = as.numeric(options.args["globalAlignmentSpan"]),
+                  RSEdistFactor = as.numeric(options.args["RSEdistFactor"]),
+                  normalization = options.args["normalization"],
+                  simMeasure = options.args["simMeasure"],
+                  alignType = options.args["alignType"],
+                  goFactor = as.numeric(options.args["goFactor"]),
+                  geFactor = as.numeric(options.args["geFactor"]),
+                  cosAngleThresh = as.numeric(options.args["cosAngleThresh"]),
+                  OverlapAlignment = as.logical(options.args["OverlapAlignment"]),
+                  dotProdThresh = as.numeric(options.args["dotProdThresh"]),
+                  gapQuantile = as.numeric(options.args["gapQuantile"]),
+                  hardConstrain = as.logical(options.args["hardConstrain"]),
+                  samples4gradient = as.numeric(options.args["samples4gradient"]),
+                  analyteFDR = as.numeric(options.args["analyteFDR"]),
+                  unalignedFDR = as.numeric(options.args["unalignedFDR"]),
+                  alignedFDR = as.numeric(options.args["alignedFDR"]),
+                  baselineType = options.args["baselineType"],
+                  integrationType = options.args["integrationType"],
+                  fitEMG = as.logical(options.args["fitEMG"]),
+                  recalIntensity = as.logical(options.args["recalIntensity"]),
+                  fillMissing = as.logical(options.args["fillMissing"]),
+                  smoothPeakArea = as.logical(options.args["smoothPeakArea"])
+)
diff -r 000000000000 -r fbbbf8c145fc dialignr.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/dialignr.xml	Wed Dec 30 20:12:57 2020 +0000
@@ -0,0 +1,159 @@
+<tool id="dialignr" name="DIAlignR" version="@WRAPPER_VERSION@">
+    <description>for retention time alignment of targeted mass spectrometric data</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <requirements>
+        <requirement type="package" version="@TOOL_VERSION@">bioconductor-dialignr</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+    #import re
+
+    mkdir -p ./data/mzml &&
+    mkdir -p ./data/osw &&
+
+    #for $mzml in $input_mzml_files:
+        #set $file_name_mzml = re.sub('[^\w\-_.]', '_', str($mzml.element_identifier))
+        echo '$file_name_mzml' >> ./runs.txt &&
+        ln -s '$mzml' './data/mzml/${file_name_mzml}.chrom.mzML' &&
+    #end for
+
+    #if $input_osw_file:
+    ln -s '$input_osw_file' './data/osw/merged.osw' &&
+    #end if
+
+    Rscript --vanilla '${__tool_directory__}/dialignr.R'
+        #if $input_osw_file:
+        --oswMerged 'TRUE'
+        #else:
+        --oswMerged 'FALSE'
+        #end if
+        --maxFdrQuery '${$adv_params.maxFdrQuery}'
+        --XICfilter '${$adv_params.XICfilter}'
+        --polyOrd '${adv_params.polyOrd}'
+        --kernelLen '${adv_params.kernelLen}'
+        --globalAlignment '${adv_params.globalAlignment}'
+        --globalAlignmentFdr '${adv_params.globalAlignmentFdr}'
+        --globalAlignmentSpan '${adv_params.globalAlignmentSpan}'
+        --RSEdistFactor '${adv_params.RSEdistFactor}'
+        --normalization '${adv_params.normalization}'
+        --simMeasure '${adv_params.simMeasure}'
+        --alignType '${adv_params.alignType}'
+        --goFactor '${adv_params.goFactor}'
+        --geFactor '${adv_params.geFactor}'
+        --cosAngleThresh '${adv_params.cosAngleThresh}'
+        --OverlapAlignment '${adv_params.OverlapAlignment}'
+        --dotProdThresh '${adv_params.dotProdThresh}'
+        --gapQuantile '${adv_params.gapQuantile}'
+        --hardConstrain '${adv_params.hardConstrain}'
+        --samples4gradient '${adv_params.samples4gradient}'
+        --analyteFDR '${adv_params.analyteFDR}'
+        --unalignedFDR '${adv_params.unalignedFDR}'
+        --alignedFDR '${adv_params.alignedFDR}'
+        --baselineType '${adv_params.baselineType}'
+        --integrationType '${adv_params.integrationType}'
+        --fitEMG '${adv_params.fitEMG}'
+        --recalIntensity '${adv_params.recalIntensity}'
+        --fillMissing '${adv_params.fillMissing}'
+        --smoothPeakArea '${adv_params.smoothPeakArea}'
+        &&
+
+    cat alignedTargetedRuns.csv | sed 's/,/\t/g' > alignedTargetedRuns.tsv
+    ]]></command>
+    <inputs>
+        <param name="input_mzml_files" type="data" format="mzml" multiple="true" label="MZML file(s)" help="Sample file(s) in .MZML format." />
+        <param name="input_osw_file" type="data" format="osw" optional="true" multiple="false" label="OSW file" help="Sample file in .OSW format." />
+        <section name="adv_params" title="Advanced parameters">
+            <param name="maxFdrQuery" type="float" min="0" max="1" value="0.05" label="Maximum FDR query" help="Numeric value between 0 and 1. It is used to filter features from osw file which have SCORE_MS2.QVALUE less than itself." />
+            <param name="XICfilter" type="select">
+                <option value="sgolay" selected="true">sgolay</option>
+                <option value="boxcar">boxcar</option>
+                <option value="gaussian">gaussian</option>
+                <option value="loess ">loess</option>
+                <option value="none">none</option>
+            </param>
+            <param name="polyOrd" type="integer" min="0" value="4" label="Order of the polynomial to be fit in the kernel" />
+            <param name="kernelLen" type="integer" min="0" value="9" label="Number of data-points to consider in the kernel" />
+            <param name="globalAlignment" type="select" label="Global alignment">
+                <option value="loess" selected="true">loess</option>
+                <option value="linear">linear</option>
+            </param>
+            <param name="globalAlignmentFdr" type="float" min="0" max="1" value="0.01" label="Global alignment FDR" help="Numeric value between 0 and 1. Features should have m-score lower than this value for participation in LOESS fit." />
+            <param name="globalAlignmentSpan" type="float" min="0" max="1" value="0.1" label="Global alignment Span" help="Span value for LOESS fit. For targeted proteomics 0.1 could be used." />
+            <param name="RSEdistFactor" type="float" min="0" value="3.5" label="RSE distance" help="Defines how much distance in the unit of rse remains a noBeef zone." />
+            <param name="normalization" type="select" label="Normalization">
+                <option value="mean" selected="true">mean</option>
+                <option value="12">12</option>
+            </param>
+            <param name="simMeasure" type="select" label="SIM measure">
+                <option value="dotProduct">dotProduct</option>
+                <option value="cosineAngle">cosineAngle</option>
+                <option value="cosine2Angle">cosine2Angle</option>
+                <option value="dotProductMasked" selected="true">dotProductMasked</option>
+                <option value="euclideanDist">euclideanDist</option>
+                <option value="covariance">covariance</option>
+                <option value="correlation">correlation</option>
+            </param>
+            <param name="alignType" type="select" label="Alignment method">
+                <option value="global">global</option>
+                <option value="local">local</option>
+                <option value="hybrid" selected="true">hybrid</option>
+            </param>
+            <param name="goFactor" type="float" min="0" value="0.125" label="Gap penalty (first gap)" help="Penalty for introducing first gap in alignment. This value is multiplied by base gap-penalty." />
+            <param name="geFactor" type="float" min="0" value="40" label="Gap penalty (subsequent gaps)" help="Penalty for introducing subsequent gaps in alignment. This value is multiplied by base gap-penalty." />
+            <param name="cosAngleThresh" type="float" min="0" value="0.3" label="cosAngleTresh" help="In SIM measure = dotProductMasked mode, angular similarity should be higher than cosAngleThresh otherwise similarity is forced to zero." />
+            <param name="OverlapAlignment" type="boolean" checked="true" truevalue="TRUE" falsevalue="FALSE" label="Overlap alignment" help="An input for alignment with free end-gaps. No: Global alignment Yes: Overlap alignment" />
+            <param name="dotProdThresh" type="float" min="0" value="0.96" label="dotProdThresh" help="In SIM measure = dotProductMasked mode, values in similarity matrix higher than dotProdThresh quantile are checked for angular similarity." />
+            <param name="gapQuantile" type="float" min="0" max="1" value="0.5" label="Gap quantile" help="Must be between 0 and 1. This is used to calculate base gap-penalty from similarity distribution." />
+            <param name="hardConstrain" type="boolean" truevalue="TRUE" falsevalue="FALSE" label="Hard constrain" help="No: Indices farther from noBeef distance are filled with distance from linear fit line." />
+            <param name="samples4gradient" type="float" min="0" value="100" label="Samples for gradient" help="Modulates penalization of masked indices." />
+            <param name="analyteFDR" type="float" min="0" max="1" value="0.01" label="Analyte FDR" help="Defines the upper limit of FDR on a precursor to be considered for multipeptide." />
+            <param name="unalignedFDR" type="float" min="0" max="1" value="0.01" label="Unaligned FDR" help="Must be between 0 and maxFdrQuery. Features below unalignedFDR are considered for quantification even without the RT alignment." />
+            <param name="alignedFDR" type="float" min="0" max="1" value="0.05" label="Aligned FDR" help="Must be between unalignedFDR and 1. Features below alignedFDRare considered for quantification after the alignment." />
+            <param name="baselineType" type="select" label="Baseline method" help="Method to estimate the background of a peak contained in XICs.">
+                <option value="base_to_base" selected="true">base to base</option>
+                <option value="vertical_division_min">vertical division min</option>
+                <option value="vertical_division_max">vertical division max</option>
+            </param>
+            <param name="integrationType" type="select" label="Integration method" help="Method to compute the area of a peak contained in XICs.">
+                <option value="intensity_sum" selected="true">intensity sum</option>
+                <option value="trapezoid">trapezoid</option>
+                <option value="simpson">simpson</option>
+            </param>
+            <param name="fitEMG" type="boolean" truevalue="TRUE" falsevalue="FALSE" label="Fit EMG" help="Enable/disable exponentially modified gaussian peak model fitting." />
+            <param name="recalIntensity" type="boolean" truevalue="TRUE" falsevalue="FALSE" label="Recal intensity" help="Recalculate intensity for all analytes." />
+            <param name="fillMissing" type="boolean" checked="true" truevalue="TRUE" falsevalue="FALSE" label="Fill missing" help="Calculate intensity for analytes for which features are not found." />
+            <param name="smoothPeakArea" type="boolean" truevalue="TRUE" falsevalue="FALSE" label="Smooth peak area" help="No: Raw chromatograms will be used for quantification. Yes: Smoothed chromatograms will be used for quantification." />
+        </section>
+    </inputs>
+    <outputs>
+        <data name="out_aligned_targeted_runs" format="tabular" label="${tool.name} on ${on_string}: alignedTargetedRuns.tsv" from_work_dir="alignedTargetedRuns.tsv" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input_mzml_files" ftype="mzml" value="hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt,hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt" />
+            <param name="input_osw_file" ftype="osw" value="merged.osw" />
+            <output name="out_aligned_targeted_runs" file="alignedTargetedRuns.tsv" />
+        </test>
+        <test>
+            <param name="input_mzml_files" ftype="mzml" value="hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt,hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt" />
+            <param name="input_osw_file" ftype="osw" value="merged.osw" />
+            <param name="adv_params|maxFdrQuery" value="0.001" />
+            <output name="out_aligned_targeted_runs" file="alignedTargetedRuns_fdr.tsv" />
+        </test>
+    </tests>
+    <help><![CDATA[
+DIAlignR
+=============
+
+DIAlignR is an R package for retention time alignment of targeted mass spectrometric data, including DIA and SWATH-MS data. This tool works with MS2 chromatograms directly and uses dynamic programming for alignment of raw chromatographic traces. DIAlignR uses a hybrid approach of global (feature-based) and local (raw data-based) alignment to establish correspondence between peaks.
+
+For more information see the DIAlignR documentation_.
+
+.. _documentation: https://github.com/shubham1637/DIAlignR
+
+    ]]></help>
+     <citations>
+         <citation type="doi">10.1074/mcp.TIR118.001132</citation>
+    </citations>
+</tool>
\ No newline at end of file
diff -r 000000000000 -r fbbbf8c145fc macros.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Wed Dec 30 20:12:57 2020 +0000
@@ -0,0 +1,4 @@
+<macros>
+    <token name="@WRAPPER_VERSION@">@TOOL_VERSION@+galaxy0</token>
+    <token name="@TOOL_VERSION@">1.2.0</token>
+</macros>
\ No newline at end of file
diff -r 000000000000 -r fbbbf8c145fc test-data/alignedTargetedRuns.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/alignedTargetedRuns.tsv	Wed Dec 30 20:12:57 2020 +0000
@@ -0,0 +1,347 @@
+"precursor"	"run"	"intensity"	"RT"	"leftWidth"	"rightWidth"	"peak_group_rank"	"m_score"	"alignment_rank"	"peptide_id"	"sequence"	"charge"	"group_label"
+470	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11116	"LIPNEAADVYVK"	2	"10434_LIPNEAADVYVK/2"
+470	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11116	"LIPNEAADVYVK"	2	"10434_LIPNEAADVYVK/2"
+898	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12064	"LVQPNQNSIETAGLHTIEHLLAK"	3	"10832_LVQPNQNSIETAGLHTIEHLLAK/3"
+898	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12064	"LVQPNQNSIETAGLHTIEHLLAK"	3	"10832_LVQPNQNSIETAGLHTIEHLLAK/3"
+997	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	729	"AHELEAGATPTQEFK"	3	"10924_AHELEAGATPTQEFK/3"
+997	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	729	"AHELEAGATPTQEFK"	3	"10924_AHELEAGATPTQEFK/3"
+1074	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9992	"KQLDEGLAGDNVGILLR"	3	"10995_KQLDEGLAGDNVGILLR/3"
+1074	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9992	"KQLDEGLAGDNVGILLR"	3	"10995_KQLDEGLAGDNVGILLR/3"
+1211	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5909	"FSSWGLTADGNIKPDIAAPGQDILSSVANNK"	3	"11123_FSSWGLTADGNIKPDIAAPGQDILSSVANNK/3"
+1211	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5909	"FSSWGLTADGNIKPDIAAPGQDILSSVANNK"	3	"11123_FSSWGLTADGNIKPDIAAPGQDILSSVANNK/3"
+1548	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9253	"ITSAPLGSMVK"	2	"11441_ITSAPLGSMVK/2"
+1548	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9253	"ITSAPLGSMVK"	2	"11441_ITSAPLGSMVK/2"
+1640	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20750	"YTPSQVAVATFTLAVNR"	3	"11526_YTPSQVAVATFTLAVNR/3"
+1640	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20750	"YTPSQVAVATFTLAVNR"	3	"11526_YTPSQVAVATFTLAVNR/3"
+1816	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5151	"EVNMNIK"	2	"11690_EVNM[147]NIK/2"
+1816	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5151	"EVNMNIK"	2	"11690_EVNM[147]NIK/2"
+1870	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5223	"EVYFVDSENAADAAELAAFR"	3	"1173_EVYFVDSENAADAAELAAFR/3"
+1870	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5223	"EVYFVDSENAADAAELAAFR"	3	"1173_EVYFVDSENAADAAELAAFR/3"
+1967	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	579.832	5088.24	5025.6572265625	5121.248046875	1	5.69207721480095e-05	1	6892	"GLPIVNLLK"	2	"1182_GLPIVNLLK/2"
+1967	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	308.483	5067.55	5005.19580078125	5100.78076171875	1	5.69207721480095e-05	1	6892	"GLPIVNLLK"	2	"1182_GLPIVNLLK/2"
+2014	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18162	"TVGLTGPEK"	2	"11874_TVGLTGPEK/2"
+2014	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18162	"TVGLTGPEK"	2	"11874_TVGLTGPEK/2"
+2107	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1115	"ALLAELATSK"	2	"11960_ALLAELATSK/2"
+2107	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1115	"ALLAELATSK"	2	"11960_ALLAELATSK/2"
+2239	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	17421	"TIIFQAPIPADVVVAYK"	3	"12079_TIIFQAPIPADVVVAYK/3"
+2239	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	17421	"TIIFQAPIPADVVVAYK"	3	"12079_TIIFQAPIPADVVVAYK/3"
+2256	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12088	"LVVAVSPDYAPFEFK"	2	"12095_LVVAVSPDYAPFEFK/2"
+2256	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12088	"LVVAVSPDYAPFEFK"	2	"12095_LVVAVSPDYAPFEFK/2"
+2352	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8034	"IANYLLIEK"	2	"12188_IANYLLIEK/2"
+2352	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8034	"IANYLLIEK"	2	"12188_IANYLLIEK/2"
+2474	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	2.32238340243828	6530.3	6516.6	6550.8	NA	NA	1	8496	"IHFLSPVRPFTLTPGDEEESFIQLITPVR"	3	"12300_IHFLSPVRPFTLTPGDEEESFIQLITPVR/3"
+2474	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	61.0299	6483.5	6468.85498046875	6499.5791015625	1	5.69207721480095e-05	1	8496	"IHFLSPVRPFTLTPGDEEESFIQLITPVR"	3	"12300_IHFLSPVRPFTLTPGDEEESFIQLITPVR/3"
+2540	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18811	"VGFAHLQDR"	2	"12362_VGFAHLQDR/2"
+2540	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18811	"VGFAHLQDR"	2	"12362_VGFAHLQDR/2"
+2660	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10101	"KTVFENVAYAMEVIGEK"	3	"12476_KTVFENVAYAMEVIGEK/3"
+2660	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10101	"KTVFENVAYAMEVIGEK"	3	"12476_KTVFENVAYAMEVIGEK/3"
+2898	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12267	"MCPIETPEGPNIGLINNLSSFGHLNK"	3	"12699_MC[160]PIETPEGPNIGLINNLSSFGHLNK/3"
+2898	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12267	"MCPIETPEGPNIGLINNLSSFGHLNK"	3	"12699_MC[160]PIETPEGPNIGLINNLSSFGHLNK/3"
+2948	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20008	"VYSNQEWTGK"	2	"12746_VYSNQEWTGK/2"
+2948	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20008	"VYSNQEWTGK"	2	"12746_VYSNQEWTGK/2"
+3070	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11689	"LSAIDQAEDRDLFK"	3	"12859_LSAIDQAEDRDLFK/3"
+3070	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11689	"LSAIDQAEDRDLFK"	3	"12859_LSAIDQAEDRDLFK/3"
+3075	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4040	"EIEEIFEWTNNNEFLQEK"	3	"12864_EIEEIFEWTNNNEFLQEK/3"
+3075	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4040	"EIEEIFEWTNNNEFLQEK"	3	"12864_EIEEIFEWTNNNEFLQEK/3"
+3166	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2257	"DATDEAKR"	2	"12949_DATDEAKR/2"
+3166	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2257	"DATDEAKR"	2	"12949_DATDEAKR/2"
+3298	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19824	"VVDGEEVTEYTTK"	3	"13070_VVDGEEVTEYTTK/3"
+3298	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19824	"VVDGEEVTEYTTK"	3	"13070_VVDGEEVTEYTTK/3"
+3541	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6345	"GEAVITEVK"	2	"13298_GEAVITEVK/2"
+3541	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6345	"GEAVITEVK"	2	"13298_GEAVITEVK/2"
+3543	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13049	"NESLDDALR"	2	"132_NESLDDALR/2"
+3543	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13049	"NESLDDALR"	2	"132_NESLDDALR/2"
+3697	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	695	"AGTLQESR"	2	"1343_AGTLQESR/2"
+3697	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	695	"AGTLQESR"	2	"1343_AGTLQESR/2"
+3750	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15273	"REYDLLNILMTNMNR"	3	"13488_REYDLLNILMTNMNR/3"
+3750	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15273	"REYDLLNILMTNMNR"	3	"13488_REYDLLNILMTNMNR/3"
+3864	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	30.1907	3658.39	3657.1279296875	3701.50610351562	2	0.0312411001163544	1	19800	"VVAGGELFKESVVVNDK"	3	"13597_VVAGGELFKESVVVNDK/3"
+3864	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	34.6354	3701.29	3674.21704101562	3715.18310546875	1	0.00104191580599325	1	19800	"VVAGGELFKESVVVNDK"	3	"13597_VVAGGELFKESVVVNDK/3"
+4018	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16633	"STTQVDATMENLQK"	3	"13740_STTQVDATMENLQK/3"
+4018	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16633	"STTQVDATMENLQK"	3	"13740_STTQVDATMENLQK/3"
+4135	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12159	"LYIQEDLR"	2	"13850_LYIQEDLR/2"
+4135	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12159	"LYIQEDLR"	2	"13850_LYIQEDLR/2"
+4439	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18550	"VDLAAEIAELKEELK"	3	"14132_VDLAAEIAELKEELK/3"
+4439	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18550	"VDLAAEIAELKEELK"	3	"14132_VDLAAEIAELKEELK/3"
+4552	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12937	"NAVGDNVSAINLLNIK"	2	"14237_NAVGDNVSAINLLNIK/2"
+4552	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12937	"NAVGDNVSAINLLNIK"	2	"14237_NAVGDNVSAINLLNIK/2"
+4618	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	310.01	5238.35	5220.7578125	5261.72314453125	1	5.69207721480095e-05	1	14383	"QFNNTDIVLLEDFQK"	3	"14299_QFNNTDIVLLEDFQK/3"
+4618	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	255.496	5240.79	5217.36083984375	5275.39501953125	1	5.69207721480095e-05	1	14383	"QFNNTDIVLLEDFQK"	3	"14299_QFNNTDIVLLEDFQK/3"
+4650	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5626	"FGVVEFDENMNAISIEEKPEVPK"	3	"1432_FGVVEFDENMNAISIEEKPEVPK/3"
+4650	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5626	"FGVVEFDENMNAISIEEKPEVPK"	3	"1432_FGVVEFDENMNAISIEEKPEVPK/3"
+4654	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8004	"IALDADGNFSK"	2	"14333_IALDADGNFSK/2"
+4654	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8004	"IALDADGNFSK"	2	"14333_IALDADGNFSK/2"
+4731	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15933	"SGTTTEPAIAFR"	2	"14404_SGTTTEPAIAFR/2"
+4731	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15933	"SGTTTEPAIAFR"	2	"14404_SGTTTEPAIAFR/2"
+4807	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3539	"EAYPGDVFYLHSR"	3	"14473_EAYPGDVFYLHSR/3"
+4807	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3539	"EAYPGDVFYLHSR"	3	"14473_EAYPGDVFYLHSR/3"
+4847	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19297	"VMEVDGSQLVK"	2	"14510_VMEVDGSQLVK/2"
+4847	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19297	"VMEVDGSQLVK"	2	"14510_VMEVDGSQLVK/2"
+4956	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11576	"LPVCMAK"	2	"14610_LPVC[160]MAK/2"
+4956	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11576	"LPVCMAK"	2	"14610_LPVC[160]MAK/2"
+5447	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	7311	"GTIFVNPGTEVYEGMIVGENSR"	3	"15068_GTIFVNPGTEVYEGMIVGENSR/3"
+5447	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	7311	"GTIFVNPGTEVYEGMIVGENSR"	3	"15068_GTIFVNPGTEVYEGMIVGENSR/3"
+5454	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13562	"NPQTGAEIEIAASKVPAFK"	3	"15074_NPQTGAEIEIAASKVPAFK/3"
+5454	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13562	"NPQTGAEIEIAASKVPAFK"	3	"15074_NPQTGAEIEIAASKVPAFK/3"
+5579	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8962	"IPDNEGNQPIDTPIR"	3	"15190_IPDNEGNQPIDTPIR/3"
+5579	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8962	"IPDNEGNQPIDTPIR"	3	"15190_IPDNEGNQPIDTPIR/3"
+5651	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19073	"VKDIIDEMNISDMTAR"	3	"15258_VKDIIDEMNISDMTAR/3"
+5651	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19073	"VKDIIDEMNISDMTAR"	3	"15258_VKDIIDEMNISDMTAR/3"
+5790	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19458	"VPVPTGSVTELVVTLDKNVSVDEINAAMK"	3	"15386_VPVPTGSVTELVVTLDKNVSVDEINAAM[147]K/3"
+5790	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19458	"VPVPTGSVTELVVTLDKNVSVDEINAAMK"	3	"15386_VPVPTGSVTELVVTLDKNVSVDEINAAM[147]K/3"
+5829	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2147	"CITTNNAQGEYYLTDVVAIFR"	3	"15422_C[160]ITTNNAQGEYYLTDVVAIFR/3"
+5829	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2147	"CITTNNAQGEYYLTDVVAIFR"	3	"15422_C[160]ITTNNAQGEYYLTDVVAIFR/3"
+5892	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15744	"SELPMELYEWK"	2	"15482_SELPMELYEWK/2"
+5892	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15744	"SELPMELYEWK"	2	"15482_SELPMELYEWK/2"
+5917	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	212	"ADAFPGSLSGGQK"	2	"15505_ADAFPGSLSGGQK/2"
+5917	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	212	"ADAFPGSLSGGQK"	2	"15505_ADAFPGSLSGGQK/2"
+5935	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	320	"ADWANGLVCTTGK"	2	"15521_ADWANGLVC[160]TTGK/2"
+5935	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	320	"ADWANGLVCTTGK"	2	"15521_ADWANGLVC[160]TTGK/2"
+6100	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10751	"LFDVYEGATIQAGK"	2	"15677_LFDVYEGATIQAGK/2"
+6100	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10751	"LFDVYEGATIQAGK"	2	"15677_LFDVYEGATIQAGK/2"
+6112	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15440	"RQAVTNPETVISIK"	2	"15688_RQAVTNPETVISIK/2"
+6112	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15440	"RQAVTNPETVISIK"	2	"15688_RQAVTNPETVISIK/2"
+6399	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20539	"YLNLDMK"	2	"15957_YLNLDM[147]K/2"
+6399	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20539	"YLNLDMK"	2	"15957_YLNLDM[147]K/2"
+6633	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8978	"IPIFGICMGHQLFSLANGAK"	3	"16174_IPIFGIC[160]MGHQLFSLANGAK/3"
+6633	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8978	"IPIFGICMGHQLFSLANGAK"	3	"16174_IPIFGIC[160]MGHQLFSLANGAK/3"
+6714	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	897	"AITAVGDRYVVEEMR"	3	"16247_AITAVGDRYVVEEMR/3"
+6714	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	897	"AITAVGDRYVVEEMR"	3	"16247_AITAVGDRYVVEEMR/3"
+6725	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8089	"IAVMPQSEQDVLDLMNYTR"	3	"16258_IAVMPQSEQDVLDLMNYTR/3"
+6725	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8089	"IAVMPQSEQDVLDLMNYTR"	3	"16258_IAVMPQSEQDVLDLMNYTR/3"
+6743	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6757	"GKEWTLSAEVVTKPEVK"	2	"16274_GKEWTLSAEVVTKPEVK/2"
+6743	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6757	"GKEWTLSAEVVTKPEVK"	2	"16274_GKEWTLSAEVVTKPEVK/2"
+6968	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16987	"TAVQVSALPLQALIEVEAVAR"	3	"16485_TAVQVSALPLQALIEVEAVAR/3"
+6968	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16987	"TAVQVSALPLQALIEVEAVAR"	3	"16485_TAVQVSALPLQALIEVEAVAR/3"
+7073	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11982	"LVELYKPQLK"	2	"16581_LVELYKPQLK/2"
+7073	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11982	"LVELYKPQLK"	2	"16581_LVELYKPQLK/2"
+7257	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10283	"LAENIHDFMENFKK"	3	"16754_LAENIHDFMENFKK/3"
+7257	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10283	"LAENIHDFMENFKK"	3	"16754_LAENIHDFMENFKK/3"
+7452	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8479	"IGVIENLLEK"	2	"16934_IGVIENLLEK/2"
+7452	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8479	"IGVIENLLEK"	2	"16934_IGVIENLLEK/2"
+7501	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6171	"GAPEGWVAPVKR"	3	"1697_GAPEGWVAPVKR/3"
+7501	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6171	"GAPEGWVAPVKR"	3	"1697_GAPEGWVAPVKR/3"
+7546	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18320	"VAAEDALAEVETPHCK"	2	"1701_VAAEDALAEVETPHC[160]K/2"
+7546	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18320	"VAAEDALAEVETPHCK"	2	"1701_VAAEDALAEVETPHC[160]K/2"
+7590	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18752	"VFNPPVDYKEEDYYQR"	3	"1705_VFNPPVDYKEEDYYQR/3"
+7590	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18752	"VFNPPVDYKEEDYYQR"	3	"1705_VFNPPVDYKEEDYYQR/3"
+7597	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13278	"NIVLVDFGLK"	2	"17066_NIVLVDFGLK/2"
+7597	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13278	"NIVLVDFGLK"	2	"17066_NIVLVDFGLK/2"
+7661	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14708	"QLLVSSLQQAQSNMER"	2	"17124_Q[111]LLVSSLQQAQSNMER/2"
+7661	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14708	"QLLVSSLQQAQSNMER"	2	"17124_Q[111]LLVSSLQQAQSNMER/2"
+7732	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8783	"ILMNIIEAIR"	2	"17191_ILMNIIEAIR/2"
+7732	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8783	"ILMNIIEAIR"	2	"17191_ILMNIIEAIR/2"
+8096	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6756	"GKELADDAKEAVEGAVDAVKEK"	3	"17534_GKELADDAKEAVEGAVDAVKEK/3"
+8096	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6756	"GKELADDAKEAVEGAVDAVKEK"	3	"17534_GKELADDAKEAVEGAVDAVKEK/3"
+8107	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20343	"YGFDRNEVIMVGDQLMTDIR"	3	"17544_YGFDRNEVIMVGDQLMTDIR/3"
+8107	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20343	"YGFDRNEVIMVGDQLMTDIR"	3	"17544_YGFDRNEVIMVGDQLMTDIR/3"
+8320	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	7063	"GNYGTNGIVGGGYALAVGAALTQQYK"	3	"17749_GNYGTNGIVGGGYALAVGAALTQQYK/3"
+8320	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	7063	"GNYGTNGIVGGGYALAVGAALTQQYK"	3	"17749_GNYGTNGIVGGGYALAVGAALTQQYK/3"
+8368	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14190	"QALTSGVIDAYISERPEAMTAEAADSR"	3	"17795_QALTSGVIDAYISERPEAMTAEAADSR/3"
+8368	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14190	"QALTSGVIDAYISERPEAMTAEAADSR"	3	"17795_QALTSGVIDAYISERPEAMTAEAADSR/3"
+8658	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1247	"ALVSADAAVVNNSYAVPAK"	3	"18067_ALVSADAAVVNNSYAVPAK/3"
+8658	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1247	"ALVSADAAVVNNSYAVPAK"	3	"18067_ALVSADAAVVNNSYAVPAK/3"
+8723	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19203	"VLILMIVDNK"	2	"18127_VLILMIVDNK/2"
+8723	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19203	"VLILMIVDNK"	2	"18127_VLILMIVDNK/2"
+8763	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3932	"EGRPSTDATLTAR"	3	"18164_EGRPSTDATLTAR/3"
+8763	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3932	"EGRPSTDATLTAR"	3	"18164_EGRPSTDATLTAR/3"
+8861	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16607	"STLTYDDKVIEK"	2	"18257_STLTYDDKVIEK/2"
+8861	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16607	"STLTYDDKVIEK"	2	"18257_STLTYDDKVIEK/2"
+8894	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8865	"IMSDDEPAK"	2	"18290_IMSDDEPAK/2"
+8894	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8865	"IMSDDEPAK"	2	"18290_IMSDDEPAK/2"
+8897	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8898	"INGHIQNEGLTFIK"	3	"18293_INGHIQNEGLTFIK/3"
+8897	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8898	"INGHIQNEGLTFIK"	3	"18293_INGHIQNEGLTFIK/3"
+9002	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1118	"ALLEEFCFGAK"	2	"18390_ALLEEFC[160]FGAK/2"
+9002	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1118	"ALLEEFCFGAK"	2	"18390_ALLEEFC[160]FGAK/2"
+9167	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	549	"AFTELER"	2	"18541_AFTELER/2"
+9167	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	549	"AFTELER"	2	"18541_AFTELER/2"
+9263	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12521	"MKVEVGDEVNR"	2	"18630_MKVEVGDEVNR/2"
+9263	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12521	"MKVEVGDEVNR"	2	"18630_MKVEVGDEVNR/2"
+9647	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10550	"LDSGDLAYLSK"	2	"18987_LDSGDLAYLSK/2"
+9647	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10550	"LDSGDLAYLSK"	2	"18987_LDSGDLAYLSK/2"
+9719	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	26.2182	2586.12	2571.73803710938	2609.2880859375	1	0.00104191580599325	1	9861	"KLIVTSEGCFK"	2	"19051_KLIVTSEGC[160]FK/2"
+9719	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	10.6563648483619	2605.9	2592.2	2640	NA	NA	1	9861	"KLIVTSEGCFK"	2	"19051_KLIVTSEGC[160]FK/2"
+9720	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	52.9595	2585.61	2564.09399414062	2605.06005859375	1	5.69207721480095e-05	1	9861	"KLIVTSEGCFK"	3	"19052_KLIVTSEGC[160]FK/3"
+9720	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	33.5961	2607.05	2591.43090820312	2625.56909179688	1	0.000200541834880119	1	9861	"KLIVTSEGCFK"	3	"19052_KLIVTSEGC[160]FK/3"
+9787	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5119	"EVLFATVGTTAPFSYEK"	3	"19113_EVLFATVGTTAPFSYEK/3"
+9787	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5119	"EVLFATVGTTAPFSYEK"	3	"19113_EVLFATVGTTAPFSYEK/3"
+9938	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5635	"FHFYEGNPLEVVTFPVR"	2	"19252_FHFYEGNPLEVVTFPVR/2"
+9938	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5635	"FHFYEGNPLEVVTFPVR"	2	"19252_FHFYEGNPLEVVTFPVR/2"
+10068	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3078	"DSGVNLTDRGEIIVDK"	3	"19371_DSGVNLTDRGEIIVDK/3"
+10068	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3078	"DSGVNLTDRGEIIVDK"	3	"19371_DSGVNLTDRGEIIVDK/3"
+10606	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	261	"ADKAGNVQALIGK"	2	"19884_ADKAGNVQALIGK/2"
+10606	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	261	"ADKAGNVQALIGK"	2	"19884_ADKAGNVQALIGK/2"
+10630	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1946	"AVLSLVTAAAK"	2	"19905_AVLSLVTAAAK/2"
+10630	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1946	"AVLSLVTAAAK"	2	"19905_AVLSLVTAAAK/2"
+10651	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6643	"GIDVDIINEVAKR"	3	"19924_GIDVDIINEVAKR/3"
+10651	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6643	"GIDVDIINEVAKR"	3	"19924_GIDVDIINEVAKR/3"
+10668	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11918	"LTSQIADALVEALNPK"	2	"19940_LTSQIADALVEALNPK/2"
+10668	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11918	"LTSQIADALVEALNPK"	2	"19940_LTSQIADALVEALNPK/2"
+10798	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5647	"FIASQVDVADAGALR"	3	"2005_FIASQVDVADAGALR/3"
+10798	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5647	"FIASQVDVADAGALR"	3	"2005_FIASQVDVADAGALR/3"
+10918	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3359	"EAAQILGLTEFLER"	2	"20172_EAAQILGLTEFLER/2"
+10918	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3359	"EAAQILGLTEFLER"	2	"20172_EAAQILGLTEFLER/2"
+11128	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11030	"LIDKIEQISIADLVAEAIIR"	3	"20367_LIDKIEQISIADLVAEAIIR/3"
+11128	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11030	"LIDKIEQISIADLVAEAIIR"	3	"20367_LIDKIEQISIADLVAEAIIR/3"
+11147	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10978	"LGVPTIIAK"	2	"20386_LGVPTIIAK/2"
+11147	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10978	"LGVPTIIAK"	2	"20386_LGVPTIIAK/2"
+11148	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11175	"LKDTISDTVNSDEAAK"	2	"20387_LKDTISDTVNSDEAAK/2"
+11148	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11175	"LKDTISDTVNSDEAAK"	2	"20387_LKDTISDTVNSDEAAK/2"
+11151	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	923	"AIVSQNVDSMTHLK"	3	"2038_AIVSQNVDSMTHLK/3"
+11151	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	923	"AIVSQNVDSMTHLK"	3	"2038_AIVSQNVDSMTHLK/3"
+11181	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4275	"ELAVQSQEELFR"	2	"2041_ELAVQSQEELFR/2"
+11181	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4275	"ELAVQSQEELFR"	2	"2041_ELAVQSQEELFR/2"
+11323	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15461	"RSNFDFDMGESR"	3	"20552_RSNFDFDMGESR/3"
+11323	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15461	"RSNFDFDMGESR"	3	"20552_RSNFDFDMGESR/3"
+11800	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2143	"CIEVPTVFQK"	2	"2322_C[143]IEVPTVFQK/2"
+11800	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2143	"CIEVPTVFQK"	2	"2322_C[143]IEVPTVFQK/2"
+11806	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15005	"QTIIFISHDLNEALR"	2	"2328_Q[111]TIIFISHDLNEALR/2"
+11806	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15005	"QTIIFISHDLNEALR"	2	"2328_Q[111]TIIFISHDLNEALR/2"
+11819	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20783	"YVGFMNTAE"	2	"233_YVGFMNTAE/2"
+11819	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20783	"YVGFMNTAE"	2	"233_YVGFMNTAE/2"
+12024	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16269	"SLYTIIR"	2	"252_SLYTIIR/2"
+12024	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16269	"SLYTIIR"	2	"252_SLYTIIR/2"
+12153	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11445	"LNAPQADMTEWSAMVDK"	2	"2652_LNAPQADMTEWSAMVDK/2"
+12153	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11445	"LNAPQADMTEWSAMVDK"	2	"2652_LNAPQADMTEWSAMVDK/2"
+12554	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13235	"NIITQSIGQASPVEPDLGVR"	3	"3021_NIITQSIGQASPVEPDLGVR/3"
+12554	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13235	"NIITQSIGQASPVEPDLGVR"	3	"3021_NIITQSIGQASPVEPDLGVR/3"
+12655	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	7623	"HAHTVTGLPDAYSR"	2	"3116_HAHTVTGLPDAYSR/2"
+12655	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	7623	"HAHTVTGLPDAYSR"	2	"3116_HAHTVTGLPDAYSR/2"
+12681	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14553	"QIIQAYGAELVLTPGAEGMK"	2	"3140_QIIQAYGAELVLTPGAEGMK/2"
+12681	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14553	"QIIQAYGAELVLTPGAEGMK"	2	"3140_QIIQAYGAELVLTPGAEGMK/2"
+12687	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16800	"SYGQNEVLK"	2	"3146_SYGQNEVLK/2"
+12687	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16800	"SYGQNEVLK"	2	"3146_SYGQNEVLK/2"
+12790	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13222	"NIFITGSTR"	2	"3245_NIFITGSTR/2"
+12790	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13222	"NIFITGSTR"	2	"3245_NIFITGSTR/2"
+12892	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16873	"TADSGYLTR"	2	"3340_TADSGYLTR/2"
+12892	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16873	"TADSGYLTR"	2	"3340_TADSGYLTR/2"
+13124	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13807	"NVTLKPMDVEEAR"	3	"3557_NVTLKPMDVEEAR/3"
+13124	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13807	"NVTLKPMDVEEAR"	3	"3557_NVTLKPMDVEEAR/3"
+13249	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14263	"QDFLLAIEK"	2	"3675_QDFLLAIEK/2"
+13249	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14263	"QDFLLAIEK"	2	"3675_QDFLLAIEK/2"
+13300	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13841	"NYLAADFLEPASEEEAR"	2	"3722_NYLAADFLEPASEEEAR/2"
+13300	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13841	"NYLAADFLEPASEEEAR"	2	"3722_NYLAADFLEPASEEEAR/2"
+13315	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14370	"QFFIGKGEEK"	2	"3736_Q[111]FFIGKGEEK/2"
+13315	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14370	"QFFIGKGEEK"	2	"3736_Q[111]FFIGKGEEK/2"
+13346	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10073	"KTFDQASQVLGYDLR"	3	"376_KTFDQASQVLGYDLR/3"
+13346	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10073	"KTFDQASQVLGYDLR"	3	"376_KTFDQASQVLGYDLR/3"
+13542	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9799	"KIVDAGVEEVTIR"	3	"3952_KIVDAGVEEVTIR/3"
+13542	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9799	"KIVDAGVEEVTIR"	3	"3952_KIVDAGVEEVTIR/3"
+13620	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6512	"GGDFVYNDLELK"	2	"4025_GGDFVYNDLELK/2"
+13620	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6512	"GGDFVYNDLELK"	2	"4025_GGDFVYNDLELK/2"
+13628	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	17094	"TEFLAGHDFK"	2	"4032_TEFLAGHDFK/2"
+13628	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	17094	"TEFLAGHDFK"	2	"4032_TEFLAGHDFK/2"
+13660	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	127	"AAMIGGADATSNVR"	2	"4064_AAMIGGADATSNVR/2"
+13660	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	127	"AAMIGGADATSNVR"	2	"4064_AAMIGGADATSNVR/2"
+13667	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10686	"LELMVTDGGNLKR"	2	"4070_LELMVTDGGNLKR/2"
+13667	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10686	"LELMVTDGGNLKR"	2	"4070_LELMVTDGGNLKR/2"
+13678	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	2860.12	4565.19	4548.64306640625	4586.19482421875	1	5.69207721480095e-05	1	19045	"VITMPAGVELTNNNNVITVK"	3	"4080_VITMPAGVELTNNNNVITVK/3"
+13678	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	1934.46	4563.35	4545.25	4589.6279296875	1	5.69207721480095e-05	1	19045	"VITMPAGVELTNNNNVITVK"	3	"4080_VITMPAGVELTNNNNVITVK/3"
+13679	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	156.28	3823.18	3807.84301757812	3841.97998046875	1	5.69207721480095e-05	1	19045	"VITMPAGVELTNNNNVITVK"	3	"4081_VITM[147]PAGVELTNNNNVITVK/3"
+13679	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	169.816	3881.72	3865.90307617188	3903.4541015625	1	5.69207721480095e-05	1	19045	"VITMPAGVELTNNNNVITVK"	3	"4081_VITM[147]PAGVELTNNNNVITVK/3"
+13909	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6703	"GINLASTNYTIDMDK"	3	"4295_GINLASTNYTIDMDK/3"
+13909	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6703	"GINLASTNYTIDMDK"	3	"4295_GINLASTNYTIDMDK/3"
+13971	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1662	"ASISAETTR"	2	"4353_ASISAETTR/2"
+13971	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1662	"ASISAETTR"	2	"4353_ASISAETTR/2"
+13981	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15787	"SFEVAEK"	2	"4362_SFEVAEK/2"
+13981	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15787	"SFEVAEK"	2	"4362_SFEVAEK/2"
+14268	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9338	"IVLNMGVGDAVSNAK"	2	"4631_IVLNMGVGDAVSNAK/2"
+14268	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9338	"IVLNMGVGDAVSNAK"	2	"4631_IVLNMGVGDAVSNAK/2"
+14378	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	416.1	4309.11	4289.39794921875	4330.365234375	1	5.69207721480095e-05	1	6342	"GEANVELTPELAFK"	2	"4731_GEANVELTPELAFK/2"
+14378	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	213.325	4351.34	4326.96923828125	4371.34912109375	1	5.69207721480095e-05	1	6342	"GEANVELTPELAFK"	2	"4731_GEANVELTPELAFK/2"
+14398	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12712	"MSDYVQGETQTLLNK"	3	"4750_MSDYVQGETQTLLNK/3"
+14398	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12712	"MSDYVQGETQTLLNK"	3	"4750_MSDYVQGETQTLLNK/3"
+14605	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20546	"YLSEIISAR"	2	"4947_YLSEIISAR/2"
+14605	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20546	"YLSEIISAR"	2	"4947_YLSEIISAR/2"
+14620	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14246	"QAYDAYTPTMTAEIMQFEKEEDAK"	3	"4960_QAYDAYTPTMTAEIMQFEKEEDAK/3"
+14620	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14246	"QAYDAYTPTMTAEIMQFEKEEDAK"	3	"4960_QAYDAYTPTMTAEIMQFEKEEDAK/3"
+14684	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5276	"EYHNLSSWELVAASTGAMTTSLDQAIK"	3	"5018_EYHNLSSWELVAASTGAMTTSLDQAIK/3"
+14684	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5276	"EYHNLSSWELVAASTGAMTTSLDQAIK"	3	"5018_EYHNLSSWELVAASTGAMTTSLDQAIK/3"
+14947	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1887	"AVEGGVEINELNVGSMAHSTGK"	2	"526_AVEGGVEINELNVGSMAHSTGK/2"
+14947	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1887	"AVEGGVEINELNVGSMAHSTGK"	2	"526_AVEGGVEINELNVGSMAHSTGK/2"
+15001	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2057	"AYIIQLGK"	2	"5321_AYIIQLGK/2"
+15001	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2057	"AYIIQLGK"	2	"5321_AYIIQLGK/2"
+15005	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20463	"YITGAFAEYDLAK"	3	"5325_YITGAFAEYDLAK/3"
+15005	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20463	"YITGAFAEYDLAK"	3	"5325_YITGAFAEYDLAK/3"
+15034	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11327	"LLMPQVSTEQFIDAAK"	3	"5352_LLM[147]PQVSTEQFIDAAK/3"
+15034	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11327	"LLMPQVSTEQFIDAAK"	3	"5352_LLM[147]PQVSTEQFIDAAK/3"
+15088	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8882	"INDLTDPNMLAHLLK"	3	"5402_INDLTDPNMLAHLLK/3"
+15088	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8882	"INDLTDPNMLAHLLK"	3	"5402_INDLTDPNMLAHLLK/3"
+15335	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2151	"CKPIYEELPGWQEDITGVR"	3	"5634_C[160]KPIYEELPGWQEDITGVR/3"
+15335	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2151	"CKPIYEELPGWQEDITGVR"	3	"5634_C[160]KPIYEELPGWQEDITGVR/3"
+15384	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8963	"IPDNEGNQPIDTPIRADGK"	3	"5680_IPDNEGNQPIDTPIRADGK/3"
+15384	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8963	"IPDNEGNQPIDTPIRADGK"	3	"5680_IPDNEGNQPIDTPIRADGK/3"
+15429	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4386	"ELLPLVR"	2	"5720_E[111]LLPLVR/2"
+15429	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4386	"ELLPLVR"	2	"5720_E[111]LLPLVR/2"
+15517	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10025	"KSEYVGTVPIGYADGWTR"	3	"5804_KSEYVGTVPIGYADGWTR/3"
+15517	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10025	"KSEYVGTVPIGYADGWTR"	3	"5804_KSEYVGTVPIGYADGWTR/3"
+15701	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1982	"AVQNAVVSVINYQDNPSSSLSNPYTK"	3	"5977_AVQNAVVSVINYQDNPSSSLSNPYTK/3"
+15701	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1982	"AVQNAVVSVINYQDNPSSSLSNPYTK"	3	"5977_AVQNAVVSVINYQDNPSSSLSNPYTK/3"
+15853	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	7260	"GSVMNPNDHPHGGGEGK"	3	"6117_GSVMNPNDHPHGGGEGK/3"
+15853	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	7260	"GSVMNPNDHPHGGGEGK"	3	"6117_GSVMNPNDHPHGGGEGK/3"
+15936	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16124	"SLAYVWTR"	2	"6196_SLAYVWTR/2"
+15936	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16124	"SLAYVWTR"	2	"6196_SLAYVWTR/2"
+15980	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15442	"RQDGSLDVYHITK"	3	"6236_RQDGSLDVYHITK/3"
+15980	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15442	"RQDGSLDVYHITK"	3	"6236_RQDGSLDVYHITK/3"
+16101	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10899	"LGIQAFEPVLIDGK"	2	"6348_LGIQAFEPVLIDGK/2"
+16101	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10899	"LGIQAFEPVLIDGK"	2	"6348_LGIQAFEPVLIDGK/2"
+16113	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	502	"AFGLDTEVVALGTPNEETAFALDYFGVEAPR"	3	"6359_AFGLDTEVVALGTPNEETAFALDYFGVEAPR/3"
+16113	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	502	"AFGLDTEVVALGTPNEETAFALDYFGVEAPR"	3	"6359_AFGLDTEVVALGTPNEETAFALDYFGVEAPR/3"
+16233	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18743	"VFHFSEPYYDTK"	2	"6469_VFHFSEPYYDTK/2"
+16233	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18743	"VFHFSEPYYDTK"	2	"6469_VFHFSEPYYDTK/2"
+16325	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8775	"ILLMDEPFSALDPISR"	2	"6553_ILLMDEPFSALDPISR/2"
+16325	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8775	"ILLMDEPFSALDPISR"	2	"6553_ILLMDEPFSALDPISR/2"
+16454	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11349	"LLRPAMVVVYN"	2	"6674_LLRPAM[147]VVVYN/2"
+16454	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11349	"LLRPAMVVVYN"	2	"6674_LLRPAM[147]VVVYN/2"
+16732	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6945	"GLYDVLVIGGGPAGNSAAIYAAR"	2	"692_GLYDVLVIGGGPAGNSAAIYAAR/2"
+16732	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6945	"GLYDVLVIGGGPAGNSAAIYAAR"	2	"692_GLYDVLVIGGGPAGNSAAIYAAR/2"
+16865	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1535	"AQGIEIGNSLVEEDKLDVAKDLLEK"	3	"7053_AQGIEIGNSLVEEDKLDVAKDLLEK/3"
+16865	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1535	"AQGIEIGNSLVEEDKLDVAKDLLEK"	3	"7053_AQGIEIGNSLVEEDKLDVAKDLLEK/3"
+16960	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20053	"WFGDDVATANIK"	2	"713_WFGDDVATANIK/2"
+16960	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20053	"WFGDDVATANIK"	2	"713_WFGDDVATANIK/2"
+16985	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18617	"VEEIASMIAGTDMTQAALTQAR"	3	"7162_VEEIASMIAGTDMTQAALTQAR/3"
+16985	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18617	"VEEIASMIAGTDMTQAALTQAR"	3	"7162_VEEIASMIAGTDMTQAALTQAR/3"
+17112	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	654	"AGLDYWDK"	2	"7284_AGLDYWDK/2"
+17112	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	654	"AGLDYWDK"	2	"7284_AGLDYWDK/2"
+17146	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14803	"QMWLDFWK"	2	"7315_QMWLDFWK/2"
+17146	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14803	"QMWLDFWK"	2	"7315_QMWLDFWK/2"
+17173	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15258	"REETGLWTFDTTLR"	3	"733_REETGLWTFDTTLR/3"
+17173	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15258	"REETGLWTFDTTLR"	3	"733_REETGLWTFDTTLR/3"
+17186	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	933.868	4681.37	4637.30078125	4708.98876953125	1	5.69207721480095e-05	1	1338	"ANAMGIPSLTVTNVPGSTLSR"	3	"7351_ANAMGIPSLTVTNVPGSTLSR/3"
+17186	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	412.235	4676.93	4647.56005859375	4709.009765625	1	5.69207721480095e-05	1	1338	"ANAMGIPSLTVTNVPGSTLSR"	3	"7351_ANAMGIPSLTVTNVPGSTLSR/3"
+17255	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12448	"MIAGLEDISEGELK"	2	"7415_MIAGLEDISEGELK/2"
+17255	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12448	"MIAGLEDISEGELK"	2	"7415_MIAGLEDISEGELK/2"
+17313	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8136	"IDEPTLQMTFLVNNSPFAGR"	3	"746_IDEPTLQMTFLVNNSPFAGR/3"
+17313	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8136	"IDEPTLQMTFLVNNSPFAGR"	3	"746_IDEPTLQMTFLVNNSPFAGR/3"
+17346	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10862	"LGFADQDYTIINPNEYADFDKMK"	3	"7501_LGFADQDYTIINPNEYADFDKMK/3"
+17346	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10862	"LGFADQDYTIINPNEYADFDKMK"	3	"7501_LGFADQDYTIINPNEYADFDKMK/3"
+17588	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3255	"DVNLADAQDGFYNPEK"	2	"7721_DVNLADAQDGFYNPEK/2"
+17588	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3255	"DVNLADAQDGFYNPEK"	2	"7721_DVNLADAQDGFYNPEK/2"
+17737	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18993	"VILYTTDFEHTVR"	2	"7857_VILYTTDFEHTVR/2"
+17737	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18993	"VILYTTDFEHTVR"	2	"7857_VILYTTDFEHTVR/2"
+17977	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8203	"IDVWGVGTK"	2	"8083_IDVWGVGTK/2"
+17977	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8203	"IDVWGVGTK"	2	"8083_IDVWGVGTK/2"
+18054	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3203	"DVEEYIPHADLR"	3	"8156_DVEEYIPHADLR/3"
+18054	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3203	"DVEEYIPHADLR"	3	"8156_DVEEYIPHADLR/3"
+18064	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18835	"VGIQMNFK"	2	"8165_VGIQMNFK/2"
+18064	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18835	"VGIQMNFK"	2	"8165_VGIQMNFK/2"
+18342	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2609	"DILPDITSVCVFDTSFHTSMAK"	3	"8427_DILPDITSVC[160]VFDTSFHTSM[147]AK/3"
+18342	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2609	"DILPDITSVCVFDTSFHTSMAK"	3	"8427_DILPDITSVC[160]VFDTSFHTSM[147]AK/3"
+18521	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11048	"LIEAVAETDEDLMMK"	3	"8594_LIEAVAETDEDLMMK/3"
+18521	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11048	"LIEAVAETDEDLMMK"	3	"8594_LIEAVAETDEDLMMK/3"
+18525	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4440	"ELSEDIMLEALLK"	2	"8598_ELSEDIMLEALLK/2"
+18525	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4440	"ELSEDIMLEALLK"	2	"8598_ELSEDIMLEALLK/2"
+18616	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3449	"EALIPLLR"	2	"8683_EALIPLLR/2"
+18616	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3449	"EALIPLLR"	2	"8683_EALIPLLR/2"
+18807	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1904	"AVFFDIDGTLLNDRK"	3	"8866_AVFFDIDGTLLNDRK/3"
+18807	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1904	"AVFFDIDGTLLNDRK"	3	"8866_AVFFDIDGTLLNDRK/3"
+19016	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12816	"MVQLLSFYDIK"	2	"9063_MVQLLSFYDIK/2"
+19016	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12816	"MVQLLSFYDIK"	2	"9063_MVQLLSFYDIK/2"
+19094	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3066	"DSFDVELTSAGDKK"	2	"9135_DSFDVELTSAGDKK/2"
+19094	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3066	"DSFDVELTSAGDKK"	2	"9135_DSFDVELTSAGDKK/2"
+19678	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11140	"LITAYDQPALGAVYK"	2	"9678_LITAYDQPALGAVYK/2"
+19678	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11140	"LITAYDQPALGAVYK"	2	"9678_LITAYDQPALGAVYK/2"
+19954	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11536	"LPERDEINPEINEALVVEFYNK"	3	"9934_LPERDEINPEINEALVVEFYNK/3"
+19954	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11536	"LPERDEINPEINEALVVEFYNK"	3	"9934_LPERDEINPEINEALVVEFYNK/3"
+20003	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	103.352199131782	4066.9	4046.4	4084	NA	NA	1	15879	"SGEISLSSWEN"	2	"997_SGEISLSSWEN/2"
+20003	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	90.125	4130.72	4107.873046875	4148.83984375	1	0.000800459573019417	1	15879	"SGEISLSSWEN"	2	"997_SGEISLSSWEN/2"
diff -r 000000000000 -r fbbbf8c145fc test-data/alignedTargetedRuns_fdr.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/alignedTargetedRuns_fdr.tsv	Wed Dec 30 20:12:57 2020 +0000
@@ -0,0 +1,305 @@
+"precursor"	"run"	"intensity"	"RT"	"leftWidth"	"rightWidth"	"peak_group_rank"	"m_score"	"alignment_rank"	"peptide_id"	"sequence"	"charge"	"group_label"
+470	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11116	"LIPNEAADVYVK"	2	"10434_LIPNEAADVYVK/2"
+470	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11116	"LIPNEAADVYVK"	2	"10434_LIPNEAADVYVK/2"
+898	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12064	"LVQPNQNSIETAGLHTIEHLLAK"	3	"10832_LVQPNQNSIETAGLHTIEHLLAK/3"
+898	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12064	"LVQPNQNSIETAGLHTIEHLLAK"	3	"10832_LVQPNQNSIETAGLHTIEHLLAK/3"
+997	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	729	"AHELEAGATPTQEFK"	3	"10924_AHELEAGATPTQEFK/3"
+997	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	729	"AHELEAGATPTQEFK"	3	"10924_AHELEAGATPTQEFK/3"
+1074	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9992	"KQLDEGLAGDNVGILLR"	3	"10995_KQLDEGLAGDNVGILLR/3"
+1074	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9992	"KQLDEGLAGDNVGILLR"	3	"10995_KQLDEGLAGDNVGILLR/3"
+1211	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5909	"FSSWGLTADGNIKPDIAAPGQDILSSVANNK"	3	"11123_FSSWGLTADGNIKPDIAAPGQDILSSVANNK/3"
+1211	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5909	"FSSWGLTADGNIKPDIAAPGQDILSSVANNK"	3	"11123_FSSWGLTADGNIKPDIAAPGQDILSSVANNK/3"
+1548	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9253	"ITSAPLGSMVK"	2	"11441_ITSAPLGSMVK/2"
+1548	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9253	"ITSAPLGSMVK"	2	"11441_ITSAPLGSMVK/2"
+1640	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20750	"YTPSQVAVATFTLAVNR"	3	"11526_YTPSQVAVATFTLAVNR/3"
+1640	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20750	"YTPSQVAVATFTLAVNR"	3	"11526_YTPSQVAVATFTLAVNR/3"
+1816	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5151	"EVNMNIK"	2	"11690_EVNM[147]NIK/2"
+1816	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5151	"EVNMNIK"	2	"11690_EVNM[147]NIK/2"
+1870	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5223	"EVYFVDSENAADAAELAAFR"	3	"1173_EVYFVDSENAADAAELAAFR/3"
+1870	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5223	"EVYFVDSENAADAAELAAFR"	3	"1173_EVYFVDSENAADAAELAAFR/3"
+1967	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	579.832	5088.24	5025.6572265625	5121.248046875	1	5.69207721480095e-05	1	6892	"GLPIVNLLK"	2	"1182_GLPIVNLLK/2"
+1967	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	308.483	5067.55	5005.19580078125	5100.78076171875	1	5.69207721480095e-05	1	6892	"GLPIVNLLK"	2	"1182_GLPIVNLLK/2"
+2014	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18162	"TVGLTGPEK"	2	"11874_TVGLTGPEK/2"
+2014	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18162	"TVGLTGPEK"	2	"11874_TVGLTGPEK/2"
+2239	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	17421	"TIIFQAPIPADVVVAYK"	3	"12079_TIIFQAPIPADVVVAYK/3"
+2239	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	17421	"TIIFQAPIPADVVVAYK"	3	"12079_TIIFQAPIPADVVVAYK/3"
+2352	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8034	"IANYLLIEK"	2	"12188_IANYLLIEK/2"
+2352	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8034	"IANYLLIEK"	2	"12188_IANYLLIEK/2"
+2474	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	2.43773179751873	6526.9	6509.8	6540.5	NA	NA	1	8496	"IHFLSPVRPFTLTPGDEEESFIQLITPVR"	3	"12300_IHFLSPVRPFTLTPGDEEESFIQLITPVR/3"
+2474	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	61.0299	6483.5	6468.85498046875	6499.5791015625	1	5.69207721480095e-05	1	8496	"IHFLSPVRPFTLTPGDEEESFIQLITPVR"	3	"12300_IHFLSPVRPFTLTPGDEEESFIQLITPVR/3"
+2540	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18811	"VGFAHLQDR"	2	"12362_VGFAHLQDR/2"
+2540	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18811	"VGFAHLQDR"	2	"12362_VGFAHLQDR/2"
+2660	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10101	"KTVFENVAYAMEVIGEK"	3	"12476_KTVFENVAYAMEVIGEK/3"
+2660	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10101	"KTVFENVAYAMEVIGEK"	3	"12476_KTVFENVAYAMEVIGEK/3"
+2898	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12267	"MCPIETPEGPNIGLINNLSSFGHLNK"	3	"12699_MC[160]PIETPEGPNIGLINNLSSFGHLNK/3"
+2898	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12267	"MCPIETPEGPNIGLINNLSSFGHLNK"	3	"12699_MC[160]PIETPEGPNIGLINNLSSFGHLNK/3"
+2948	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20008	"VYSNQEWTGK"	2	"12746_VYSNQEWTGK/2"
+2948	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20008	"VYSNQEWTGK"	2	"12746_VYSNQEWTGK/2"
+3070	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11689	"LSAIDQAEDRDLFK"	3	"12859_LSAIDQAEDRDLFK/3"
+3070	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11689	"LSAIDQAEDRDLFK"	3	"12859_LSAIDQAEDRDLFK/3"
+3075	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4040	"EIEEIFEWTNNNEFLQEK"	3	"12864_EIEEIFEWTNNNEFLQEK/3"
+3075	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4040	"EIEEIFEWTNNNEFLQEK"	3	"12864_EIEEIFEWTNNNEFLQEK/3"
+3166	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2257	"DATDEAKR"	2	"12949_DATDEAKR/2"
+3166	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2257	"DATDEAKR"	2	"12949_DATDEAKR/2"
+3298	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19824	"VVDGEEVTEYTTK"	3	"13070_VVDGEEVTEYTTK/3"
+3298	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19824	"VVDGEEVTEYTTK"	3	"13070_VVDGEEVTEYTTK/3"
+3541	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6345	"GEAVITEVK"	2	"13298_GEAVITEVK/2"
+3541	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6345	"GEAVITEVK"	2	"13298_GEAVITEVK/2"
+3543	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13049	"NESLDDALR"	2	"132_NESLDDALR/2"
+3543	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13049	"NESLDDALR"	2	"132_NESLDDALR/2"
+3697	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	695	"AGTLQESR"	2	"1343_AGTLQESR/2"
+3697	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	695	"AGTLQESR"	2	"1343_AGTLQESR/2"
+3750	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15273	"REYDLLNILMTNMNR"	3	"13488_REYDLLNILMTNMNR/3"
+3750	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15273	"REYDLLNILMTNMNR"	3	"13488_REYDLLNILMTNMNR/3"
+4018	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16633	"STTQVDATMENLQK"	3	"13740_STTQVDATMENLQK/3"
+4018	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16633	"STTQVDATMENLQK"	3	"13740_STTQVDATMENLQK/3"
+4135	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12159	"LYIQEDLR"	2	"13850_LYIQEDLR/2"
+4135	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12159	"LYIQEDLR"	2	"13850_LYIQEDLR/2"
+4439	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18550	"VDLAAEIAELKEELK"	3	"14132_VDLAAEIAELKEELK/3"
+4439	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18550	"VDLAAEIAELKEELK"	3	"14132_VDLAAEIAELKEELK/3"
+4552	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12937	"NAVGDNVSAINLLNIK"	2	"14237_NAVGDNVSAINLLNIK/2"
+4552	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12937	"NAVGDNVSAINLLNIK"	2	"14237_NAVGDNVSAINLLNIK/2"
+4618	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	310.01	5238.35	5220.7578125	5261.72314453125	1	5.69207721480095e-05	1	14383	"QFNNTDIVLLEDFQK"	3	"14299_QFNNTDIVLLEDFQK/3"
+4618	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	255.496	5240.79	5217.36083984375	5275.39501953125	1	5.69207721480095e-05	1	14383	"QFNNTDIVLLEDFQK"	3	"14299_QFNNTDIVLLEDFQK/3"
+4650	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5626	"FGVVEFDENMNAISIEEKPEVPK"	3	"1432_FGVVEFDENMNAISIEEKPEVPK/3"
+4650	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5626	"FGVVEFDENMNAISIEEKPEVPK"	3	"1432_FGVVEFDENMNAISIEEKPEVPK/3"
+4654	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8004	"IALDADGNFSK"	2	"14333_IALDADGNFSK/2"
+4654	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8004	"IALDADGNFSK"	2	"14333_IALDADGNFSK/2"
+4731	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15933	"SGTTTEPAIAFR"	2	"14404_SGTTTEPAIAFR/2"
+4731	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15933	"SGTTTEPAIAFR"	2	"14404_SGTTTEPAIAFR/2"
+4807	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3539	"EAYPGDVFYLHSR"	3	"14473_EAYPGDVFYLHSR/3"
+4807	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3539	"EAYPGDVFYLHSR"	3	"14473_EAYPGDVFYLHSR/3"
+4847	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19297	"VMEVDGSQLVK"	2	"14510_VMEVDGSQLVK/2"
+4847	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19297	"VMEVDGSQLVK"	2	"14510_VMEVDGSQLVK/2"
+4956	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11576	"LPVCMAK"	2	"14610_LPVC[160]MAK/2"
+4956	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11576	"LPVCMAK"	2	"14610_LPVC[160]MAK/2"
+5447	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	7311	"GTIFVNPGTEVYEGMIVGENSR"	3	"15068_GTIFVNPGTEVYEGMIVGENSR/3"
+5447	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	7311	"GTIFVNPGTEVYEGMIVGENSR"	3	"15068_GTIFVNPGTEVYEGMIVGENSR/3"
+5454	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13562	"NPQTGAEIEIAASKVPAFK"	3	"15074_NPQTGAEIEIAASKVPAFK/3"
+5454	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13562	"NPQTGAEIEIAASKVPAFK"	3	"15074_NPQTGAEIEIAASKVPAFK/3"
+5579	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8962	"IPDNEGNQPIDTPIR"	3	"15190_IPDNEGNQPIDTPIR/3"
+5579	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8962	"IPDNEGNQPIDTPIR"	3	"15190_IPDNEGNQPIDTPIR/3"
+5651	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19073	"VKDIIDEMNISDMTAR"	3	"15258_VKDIIDEMNISDMTAR/3"
+5651	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19073	"VKDIIDEMNISDMTAR"	3	"15258_VKDIIDEMNISDMTAR/3"
+5790	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19458	"VPVPTGSVTELVVTLDKNVSVDEINAAMK"	3	"15386_VPVPTGSVTELVVTLDKNVSVDEINAAM[147]K/3"
+5790	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19458	"VPVPTGSVTELVVTLDKNVSVDEINAAMK"	3	"15386_VPVPTGSVTELVVTLDKNVSVDEINAAM[147]K/3"
+5829	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2147	"CITTNNAQGEYYLTDVVAIFR"	3	"15422_C[160]ITTNNAQGEYYLTDVVAIFR/3"
+5829	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2147	"CITTNNAQGEYYLTDVVAIFR"	3	"15422_C[160]ITTNNAQGEYYLTDVVAIFR/3"
+5892	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15744	"SELPMELYEWK"	2	"15482_SELPMELYEWK/2"
+5892	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15744	"SELPMELYEWK"	2	"15482_SELPMELYEWK/2"
+5917	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	212	"ADAFPGSLSGGQK"	2	"15505_ADAFPGSLSGGQK/2"
+5917	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	212	"ADAFPGSLSGGQK"	2	"15505_ADAFPGSLSGGQK/2"
+5935	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	320	"ADWANGLVCTTGK"	2	"15521_ADWANGLVC[160]TTGK/2"
+5935	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	320	"ADWANGLVCTTGK"	2	"15521_ADWANGLVC[160]TTGK/2"
+6100	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10751	"LFDVYEGATIQAGK"	2	"15677_LFDVYEGATIQAGK/2"
+6100	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10751	"LFDVYEGATIQAGK"	2	"15677_LFDVYEGATIQAGK/2"
+6112	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15440	"RQAVTNPETVISIK"	2	"15688_RQAVTNPETVISIK/2"
+6112	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15440	"RQAVTNPETVISIK"	2	"15688_RQAVTNPETVISIK/2"
+6633	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8978	"IPIFGICMGHQLFSLANGAK"	3	"16174_IPIFGIC[160]MGHQLFSLANGAK/3"
+6633	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8978	"IPIFGICMGHQLFSLANGAK"	3	"16174_IPIFGIC[160]MGHQLFSLANGAK/3"
+6714	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	897	"AITAVGDRYVVEEMR"	3	"16247_AITAVGDRYVVEEMR/3"
+6714	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	897	"AITAVGDRYVVEEMR"	3	"16247_AITAVGDRYVVEEMR/3"
+6725	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8089	"IAVMPQSEQDVLDLMNYTR"	3	"16258_IAVMPQSEQDVLDLMNYTR/3"
+6725	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8089	"IAVMPQSEQDVLDLMNYTR"	3	"16258_IAVMPQSEQDVLDLMNYTR/3"
+6968	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16987	"TAVQVSALPLQALIEVEAVAR"	3	"16485_TAVQVSALPLQALIEVEAVAR/3"
+6968	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16987	"TAVQVSALPLQALIEVEAVAR"	3	"16485_TAVQVSALPLQALIEVEAVAR/3"
+7073	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11982	"LVELYKPQLK"	2	"16581_LVELYKPQLK/2"
+7073	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11982	"LVELYKPQLK"	2	"16581_LVELYKPQLK/2"
+7452	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8479	"IGVIENLLEK"	2	"16934_IGVIENLLEK/2"
+7452	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8479	"IGVIENLLEK"	2	"16934_IGVIENLLEK/2"
+7501	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6171	"GAPEGWVAPVKR"	3	"1697_GAPEGWVAPVKR/3"
+7501	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6171	"GAPEGWVAPVKR"	3	"1697_GAPEGWVAPVKR/3"
+7546	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18320	"VAAEDALAEVETPHCK"	2	"1701_VAAEDALAEVETPHC[160]K/2"
+7546	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18320	"VAAEDALAEVETPHCK"	2	"1701_VAAEDALAEVETPHC[160]K/2"
+7590	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18752	"VFNPPVDYKEEDYYQR"	3	"1705_VFNPPVDYKEEDYYQR/3"
+7590	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18752	"VFNPPVDYKEEDYYQR"	3	"1705_VFNPPVDYKEEDYYQR/3"
+7597	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13278	"NIVLVDFGLK"	2	"17066_NIVLVDFGLK/2"
+7597	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13278	"NIVLVDFGLK"	2	"17066_NIVLVDFGLK/2"
+7732	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8783	"ILMNIIEAIR"	2	"17191_ILMNIIEAIR/2"
+7732	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8783	"ILMNIIEAIR"	2	"17191_ILMNIIEAIR/2"
+8107	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20343	"YGFDRNEVIMVGDQLMTDIR"	3	"17544_YGFDRNEVIMVGDQLMTDIR/3"
+8107	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20343	"YGFDRNEVIMVGDQLMTDIR"	3	"17544_YGFDRNEVIMVGDQLMTDIR/3"
+8320	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	7063	"GNYGTNGIVGGGYALAVGAALTQQYK"	3	"17749_GNYGTNGIVGGGYALAVGAALTQQYK/3"
+8320	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	7063	"GNYGTNGIVGGGYALAVGAALTQQYK"	3	"17749_GNYGTNGIVGGGYALAVGAALTQQYK/3"
+8368	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14190	"QALTSGVIDAYISERPEAMTAEAADSR"	3	"17795_QALTSGVIDAYISERPEAMTAEAADSR/3"
+8368	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14190	"QALTSGVIDAYISERPEAMTAEAADSR"	3	"17795_QALTSGVIDAYISERPEAMTAEAADSR/3"
+8658	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1247	"ALVSADAAVVNNSYAVPAK"	3	"18067_ALVSADAAVVNNSYAVPAK/3"
+8658	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1247	"ALVSADAAVVNNSYAVPAK"	3	"18067_ALVSADAAVVNNSYAVPAK/3"
+8723	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19203	"VLILMIVDNK"	2	"18127_VLILMIVDNK/2"
+8723	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	19203	"VLILMIVDNK"	2	"18127_VLILMIVDNK/2"
+8763	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3932	"EGRPSTDATLTAR"	3	"18164_EGRPSTDATLTAR/3"
+8763	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3932	"EGRPSTDATLTAR"	3	"18164_EGRPSTDATLTAR/3"
+8861	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16607	"STLTYDDKVIEK"	2	"18257_STLTYDDKVIEK/2"
+8861	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16607	"STLTYDDKVIEK"	2	"18257_STLTYDDKVIEK/2"
+8894	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8865	"IMSDDEPAK"	2	"18290_IMSDDEPAK/2"
+8894	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8865	"IMSDDEPAK"	2	"18290_IMSDDEPAK/2"
+8897	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8898	"INGHIQNEGLTFIK"	3	"18293_INGHIQNEGLTFIK/3"
+8897	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8898	"INGHIQNEGLTFIK"	3	"18293_INGHIQNEGLTFIK/3"
+9002	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1118	"ALLEEFCFGAK"	2	"18390_ALLEEFC[160]FGAK/2"
+9002	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1118	"ALLEEFCFGAK"	2	"18390_ALLEEFC[160]FGAK/2"
+9167	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	549	"AFTELER"	2	"18541_AFTELER/2"
+9167	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	549	"AFTELER"	2	"18541_AFTELER/2"
+9263	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12521	"MKVEVGDEVNR"	2	"18630_MKVEVGDEVNR/2"
+9263	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12521	"MKVEVGDEVNR"	2	"18630_MKVEVGDEVNR/2"
+9647	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10550	"LDSGDLAYLSK"	2	"18987_LDSGDLAYLSK/2"
+9647	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10550	"LDSGDLAYLSK"	2	"18987_LDSGDLAYLSK/2"
+9720	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	52.9595	2585.61	2564.09399414062	2605.06005859375	1	5.69207721480095e-05	1	9861	"KLIVTSEGCFK"	3	"19052_KLIVTSEGC[160]FK/3"
+9720	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	33.5961	2607.05	2591.43090820312	2625.56909179688	1	0.000200541834880119	1	9861	"KLIVTSEGCFK"	3	"19052_KLIVTSEGC[160]FK/3"
+9787	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5119	"EVLFATVGTTAPFSYEK"	3	"19113_EVLFATVGTTAPFSYEK/3"
+9787	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5119	"EVLFATVGTTAPFSYEK"	3	"19113_EVLFATVGTTAPFSYEK/3"
+9938	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5635	"FHFYEGNPLEVVTFPVR"	2	"19252_FHFYEGNPLEVVTFPVR/2"
+9938	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5635	"FHFYEGNPLEVVTFPVR"	2	"19252_FHFYEGNPLEVVTFPVR/2"
+10606	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	261	"ADKAGNVQALIGK"	2	"19884_ADKAGNVQALIGK/2"
+10606	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	261	"ADKAGNVQALIGK"	2	"19884_ADKAGNVQALIGK/2"
+10651	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6643	"GIDVDIINEVAKR"	3	"19924_GIDVDIINEVAKR/3"
+10651	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6643	"GIDVDIINEVAKR"	3	"19924_GIDVDIINEVAKR/3"
+10668	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11918	"LTSQIADALVEALNPK"	2	"19940_LTSQIADALVEALNPK/2"
+10668	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11918	"LTSQIADALVEALNPK"	2	"19940_LTSQIADALVEALNPK/2"
+10798	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5647	"FIASQVDVADAGALR"	3	"2005_FIASQVDVADAGALR/3"
+10798	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	5647	"FIASQVDVADAGALR"	3	"2005_FIASQVDVADAGALR/3"
+10918	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3359	"EAAQILGLTEFLER"	2	"20172_EAAQILGLTEFLER/2"
+10918	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3359	"EAAQILGLTEFLER"	2	"20172_EAAQILGLTEFLER/2"
+11128	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11030	"LIDKIEQISIADLVAEAIIR"	3	"20367_LIDKIEQISIADLVAEAIIR/3"
+11128	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11030	"LIDKIEQISIADLVAEAIIR"	3	"20367_LIDKIEQISIADLVAEAIIR/3"
+11148	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11175	"LKDTISDTVNSDEAAK"	2	"20387_LKDTISDTVNSDEAAK/2"
+11148	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11175	"LKDTISDTVNSDEAAK"	2	"20387_LKDTISDTVNSDEAAK/2"
+11151	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	923	"AIVSQNVDSMTHLK"	3	"2038_AIVSQNVDSMTHLK/3"
+11151	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	923	"AIVSQNVDSMTHLK"	3	"2038_AIVSQNVDSMTHLK/3"
+11181	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4275	"ELAVQSQEELFR"	2	"2041_ELAVQSQEELFR/2"
+11181	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4275	"ELAVQSQEELFR"	2	"2041_ELAVQSQEELFR/2"
+11323	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15461	"RSNFDFDMGESR"	3	"20552_RSNFDFDMGESR/3"
+11323	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15461	"RSNFDFDMGESR"	3	"20552_RSNFDFDMGESR/3"
+11800	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2143	"CIEVPTVFQK"	2	"2322_C[143]IEVPTVFQK/2"
+11800	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2143	"CIEVPTVFQK"	2	"2322_C[143]IEVPTVFQK/2"
+11806	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15005	"QTIIFISHDLNEALR"	2	"2328_Q[111]TIIFISHDLNEALR/2"
+11806	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15005	"QTIIFISHDLNEALR"	2	"2328_Q[111]TIIFISHDLNEALR/2"
+11819	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20783	"YVGFMNTAE"	2	"233_YVGFMNTAE/2"
+11819	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20783	"YVGFMNTAE"	2	"233_YVGFMNTAE/2"
+12024	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16269	"SLYTIIR"	2	"252_SLYTIIR/2"
+12024	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16269	"SLYTIIR"	2	"252_SLYTIIR/2"
+12153	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11445	"LNAPQADMTEWSAMVDK"	2	"2652_LNAPQADMTEWSAMVDK/2"
+12153	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11445	"LNAPQADMTEWSAMVDK"	2	"2652_LNAPQADMTEWSAMVDK/2"
+12554	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13235	"NIITQSIGQASPVEPDLGVR"	3	"3021_NIITQSIGQASPVEPDLGVR/3"
+12554	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13235	"NIITQSIGQASPVEPDLGVR"	3	"3021_NIITQSIGQASPVEPDLGVR/3"
+12681	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14553	"QIIQAYGAELVLTPGAEGMK"	2	"3140_QIIQAYGAELVLTPGAEGMK/2"
+12681	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14553	"QIIQAYGAELVLTPGAEGMK"	2	"3140_QIIQAYGAELVLTPGAEGMK/2"
+12687	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16800	"SYGQNEVLK"	2	"3146_SYGQNEVLK/2"
+12687	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16800	"SYGQNEVLK"	2	"3146_SYGQNEVLK/2"
+12790	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13222	"NIFITGSTR"	2	"3245_NIFITGSTR/2"
+12790	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13222	"NIFITGSTR"	2	"3245_NIFITGSTR/2"
+12892	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16873	"TADSGYLTR"	2	"3340_TADSGYLTR/2"
+12892	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16873	"TADSGYLTR"	2	"3340_TADSGYLTR/2"
+13124	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13807	"NVTLKPMDVEEAR"	3	"3557_NVTLKPMDVEEAR/3"
+13124	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13807	"NVTLKPMDVEEAR"	3	"3557_NVTLKPMDVEEAR/3"
+13249	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14263	"QDFLLAIEK"	2	"3675_QDFLLAIEK/2"
+13249	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14263	"QDFLLAIEK"	2	"3675_QDFLLAIEK/2"
+13300	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13841	"NYLAADFLEPASEEEAR"	2	"3722_NYLAADFLEPASEEEAR/2"
+13300	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	13841	"NYLAADFLEPASEEEAR"	2	"3722_NYLAADFLEPASEEEAR/2"
+13315	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14370	"QFFIGKGEEK"	2	"3736_Q[111]FFIGKGEEK/2"
+13315	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14370	"QFFIGKGEEK"	2	"3736_Q[111]FFIGKGEEK/2"
+13346	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10073	"KTFDQASQVLGYDLR"	3	"376_KTFDQASQVLGYDLR/3"
+13346	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10073	"KTFDQASQVLGYDLR"	3	"376_KTFDQASQVLGYDLR/3"
+13542	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9799	"KIVDAGVEEVTIR"	3	"3952_KIVDAGVEEVTIR/3"
+13542	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9799	"KIVDAGVEEVTIR"	3	"3952_KIVDAGVEEVTIR/3"
+13620	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6512	"GGDFVYNDLELK"	2	"4025_GGDFVYNDLELK/2"
+13620	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6512	"GGDFVYNDLELK"	2	"4025_GGDFVYNDLELK/2"
+13628	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	17094	"TEFLAGHDFK"	2	"4032_TEFLAGHDFK/2"
+13628	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	17094	"TEFLAGHDFK"	2	"4032_TEFLAGHDFK/2"
+13660	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	127	"AAMIGGADATSNVR"	2	"4064_AAMIGGADATSNVR/2"
+13660	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	127	"AAMIGGADATSNVR"	2	"4064_AAMIGGADATSNVR/2"
+13667	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10686	"LELMVTDGGNLKR"	2	"4070_LELMVTDGGNLKR/2"
+13667	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10686	"LELMVTDGGNLKR"	2	"4070_LELMVTDGGNLKR/2"
+13678	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	2860.12	4565.19	4548.64306640625	4586.19482421875	1	5.69207721480095e-05	1	19045	"VITMPAGVELTNNNNVITVK"	3	"4080_VITMPAGVELTNNNNVITVK/3"
+13678	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	1934.46	4563.35	4545.25	4589.6279296875	1	5.69207721480095e-05	1	19045	"VITMPAGVELTNNNNVITVK"	3	"4080_VITMPAGVELTNNNNVITVK/3"
+13679	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	156.28	3823.18	3807.84301757812	3841.97998046875	1	5.69207721480095e-05	1	19045	"VITMPAGVELTNNNNVITVK"	3	"4081_VITM[147]PAGVELTNNNNVITVK/3"
+13679	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	169.816	3881.72	3865.90307617188	3903.4541015625	1	5.69207721480095e-05	1	19045	"VITMPAGVELTNNNNVITVK"	3	"4081_VITM[147]PAGVELTNNNNVITVK/3"
+13909	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6703	"GINLASTNYTIDMDK"	3	"4295_GINLASTNYTIDMDK/3"
+13909	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6703	"GINLASTNYTIDMDK"	3	"4295_GINLASTNYTIDMDK/3"
+13971	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1662	"ASISAETTR"	2	"4353_ASISAETTR/2"
+13971	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1662	"ASISAETTR"	2	"4353_ASISAETTR/2"
+14268	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9338	"IVLNMGVGDAVSNAK"	2	"4631_IVLNMGVGDAVSNAK/2"
+14268	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	9338	"IVLNMGVGDAVSNAK"	2	"4631_IVLNMGVGDAVSNAK/2"
+14378	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	416.1	4309.11	4289.39794921875	4330.365234375	1	5.69207721480095e-05	1	6342	"GEANVELTPELAFK"	2	"4731_GEANVELTPELAFK/2"
+14378	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	213.325	4351.34	4326.96923828125	4371.34912109375	1	5.69207721480095e-05	1	6342	"GEANVELTPELAFK"	2	"4731_GEANVELTPELAFK/2"
+14398	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12712	"MSDYVQGETQTLLNK"	3	"4750_MSDYVQGETQTLLNK/3"
+14398	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12712	"MSDYVQGETQTLLNK"	3	"4750_MSDYVQGETQTLLNK/3"
+14605	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20546	"YLSEIISAR"	2	"4947_YLSEIISAR/2"
+14605	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20546	"YLSEIISAR"	2	"4947_YLSEIISAR/2"
+14620	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14246	"QAYDAYTPTMTAEIMQFEKEEDAK"	3	"4960_QAYDAYTPTMTAEIMQFEKEEDAK/3"
+14620	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14246	"QAYDAYTPTMTAEIMQFEKEEDAK"	3	"4960_QAYDAYTPTMTAEIMQFEKEEDAK/3"
+14947	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1887	"AVEGGVEINELNVGSMAHSTGK"	2	"526_AVEGGVEINELNVGSMAHSTGK/2"
+14947	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1887	"AVEGGVEINELNVGSMAHSTGK"	2	"526_AVEGGVEINELNVGSMAHSTGK/2"
+15001	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2057	"AYIIQLGK"	2	"5321_AYIIQLGK/2"
+15001	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2057	"AYIIQLGK"	2	"5321_AYIIQLGK/2"
+15088	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8882	"INDLTDPNMLAHLLK"	3	"5402_INDLTDPNMLAHLLK/3"
+15088	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8882	"INDLTDPNMLAHLLK"	3	"5402_INDLTDPNMLAHLLK/3"
+15335	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2151	"CKPIYEELPGWQEDITGVR"	3	"5634_C[160]KPIYEELPGWQEDITGVR/3"
+15335	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	2151	"CKPIYEELPGWQEDITGVR"	3	"5634_C[160]KPIYEELPGWQEDITGVR/3"
+15384	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8963	"IPDNEGNQPIDTPIRADGK"	3	"5680_IPDNEGNQPIDTPIRADGK/3"
+15384	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8963	"IPDNEGNQPIDTPIRADGK"	3	"5680_IPDNEGNQPIDTPIRADGK/3"
+15429	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4386	"ELLPLVR"	2	"5720_E[111]LLPLVR/2"
+15429	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4386	"ELLPLVR"	2	"5720_E[111]LLPLVR/2"
+15517	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10025	"KSEYVGTVPIGYADGWTR"	3	"5804_KSEYVGTVPIGYADGWTR/3"
+15517	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10025	"KSEYVGTVPIGYADGWTR"	3	"5804_KSEYVGTVPIGYADGWTR/3"
+15701	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1982	"AVQNAVVSVINYQDNPSSSLSNPYTK"	3	"5977_AVQNAVVSVINYQDNPSSSLSNPYTK/3"
+15701	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1982	"AVQNAVVSVINYQDNPSSSLSNPYTK"	3	"5977_AVQNAVVSVINYQDNPSSSLSNPYTK/3"
+15853	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	7260	"GSVMNPNDHPHGGGEGK"	3	"6117_GSVMNPNDHPHGGGEGK/3"
+15853	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	7260	"GSVMNPNDHPHGGGEGK"	3	"6117_GSVMNPNDHPHGGGEGK/3"
+15936	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16124	"SLAYVWTR"	2	"6196_SLAYVWTR/2"
+15936	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	16124	"SLAYVWTR"	2	"6196_SLAYVWTR/2"
+15980	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15442	"RQDGSLDVYHITK"	3	"6236_RQDGSLDVYHITK/3"
+15980	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15442	"RQDGSLDVYHITK"	3	"6236_RQDGSLDVYHITK/3"
+16101	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10899	"LGIQAFEPVLIDGK"	2	"6348_LGIQAFEPVLIDGK/2"
+16101	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10899	"LGIQAFEPVLIDGK"	2	"6348_LGIQAFEPVLIDGK/2"
+16113	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	502	"AFGLDTEVVALGTPNEETAFALDYFGVEAPR"	3	"6359_AFGLDTEVVALGTPNEETAFALDYFGVEAPR/3"
+16113	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	502	"AFGLDTEVVALGTPNEETAFALDYFGVEAPR"	3	"6359_AFGLDTEVVALGTPNEETAFALDYFGVEAPR/3"
+16233	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18743	"VFHFSEPYYDTK"	2	"6469_VFHFSEPYYDTK/2"
+16233	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18743	"VFHFSEPYYDTK"	2	"6469_VFHFSEPYYDTK/2"
+16325	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8775	"ILLMDEPFSALDPISR"	2	"6553_ILLMDEPFSALDPISR/2"
+16325	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8775	"ILLMDEPFSALDPISR"	2	"6553_ILLMDEPFSALDPISR/2"
+16454	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11349	"LLRPAMVVVYN"	2	"6674_LLRPAM[147]VVVYN/2"
+16454	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11349	"LLRPAMVVVYN"	2	"6674_LLRPAM[147]VVVYN/2"
+16732	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6945	"GLYDVLVIGGGPAGNSAAIYAAR"	2	"692_GLYDVLVIGGGPAGNSAAIYAAR/2"
+16732	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	6945	"GLYDVLVIGGGPAGNSAAIYAAR"	2	"692_GLYDVLVIGGGPAGNSAAIYAAR/2"
+16865	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1535	"AQGIEIGNSLVEEDKLDVAKDLLEK"	3	"7053_AQGIEIGNSLVEEDKLDVAKDLLEK/3"
+16865	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	1535	"AQGIEIGNSLVEEDKLDVAKDLLEK"	3	"7053_AQGIEIGNSLVEEDKLDVAKDLLEK/3"
+16960	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20053	"WFGDDVATANIK"	2	"713_WFGDDVATANIK/2"
+16960	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	20053	"WFGDDVATANIK"	2	"713_WFGDDVATANIK/2"
+17112	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	654	"AGLDYWDK"	2	"7284_AGLDYWDK/2"
+17112	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	654	"AGLDYWDK"	2	"7284_AGLDYWDK/2"
+17146	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14803	"QMWLDFWK"	2	"7315_QMWLDFWK/2"
+17146	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	14803	"QMWLDFWK"	2	"7315_QMWLDFWK/2"
+17173	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15258	"REETGLWTFDTTLR"	3	"733_REETGLWTFDTTLR/3"
+17173	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	15258	"REETGLWTFDTTLR"	3	"733_REETGLWTFDTTLR/3"
+17186	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	933.868	4681.37	4637.30078125	4708.98876953125	1	5.69207721480095e-05	1	1338	"ANAMGIPSLTVTNVPGSTLSR"	3	"7351_ANAMGIPSLTVTNVPGSTLSR/3"
+17186	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	412.235	4676.93	4647.56005859375	4709.009765625	1	5.69207721480095e-05	1	1338	"ANAMGIPSLTVTNVPGSTLSR"	3	"7351_ANAMGIPSLTVTNVPGSTLSR/3"
+17255	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12448	"MIAGLEDISEGELK"	2	"7415_MIAGLEDISEGELK/2"
+17255	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12448	"MIAGLEDISEGELK"	2	"7415_MIAGLEDISEGELK/2"
+17313	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8136	"IDEPTLQMTFLVNNSPFAGR"	3	"746_IDEPTLQMTFLVNNSPFAGR/3"
+17313	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8136	"IDEPTLQMTFLVNNSPFAGR"	3	"746_IDEPTLQMTFLVNNSPFAGR/3"
+17346	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10862	"LGFADQDYTIINPNEYADFDKMK"	3	"7501_LGFADQDYTIINPNEYADFDKMK/3"
+17346	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	10862	"LGFADQDYTIINPNEYADFDKMK"	3	"7501_LGFADQDYTIINPNEYADFDKMK/3"
+17588	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3255	"DVNLADAQDGFYNPEK"	2	"7721_DVNLADAQDGFYNPEK/2"
+17588	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3255	"DVNLADAQDGFYNPEK"	2	"7721_DVNLADAQDGFYNPEK/2"
+17737	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18993	"VILYTTDFEHTVR"	2	"7857_VILYTTDFEHTVR/2"
+17737	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18993	"VILYTTDFEHTVR"	2	"7857_VILYTTDFEHTVR/2"
+17977	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8203	"IDVWGVGTK"	2	"8083_IDVWGVGTK/2"
+17977	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	8203	"IDVWGVGTK"	2	"8083_IDVWGVGTK/2"
+18064	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18835	"VGIQMNFK"	2	"8165_VGIQMNFK/2"
+18064	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	18835	"VGIQMNFK"	2	"8165_VGIQMNFK/2"
+18521	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11048	"LIEAVAETDEDLMMK"	3	"8594_LIEAVAETDEDLMMK/3"
+18521	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11048	"LIEAVAETDEDLMMK"	3	"8594_LIEAVAETDEDLMMK/3"
+18525	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4440	"ELSEDIMLEALLK"	2	"8598_ELSEDIMLEALLK/2"
+18525	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	4440	"ELSEDIMLEALLK"	2	"8598_ELSEDIMLEALLK/2"
+18616	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3449	"EALIPLLR"	2	"8683_EALIPLLR/2"
+18616	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3449	"EALIPLLR"	2	"8683_EALIPLLR/2"
+19016	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12816	"MVQLLSFYDIK"	2	"9063_MVQLLSFYDIK/2"
+19016	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	12816	"MVQLLSFYDIK"	2	"9063_MVQLLSFYDIK/2"
+19094	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3066	"DSFDVELTSAGDKK"	2	"9135_DSFDVELTSAGDKK/2"
+19094	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	3066	"DSFDVELTSAGDKK"	2	"9135_DSFDVELTSAGDKK/2"
+19678	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11140	"LITAYDQPALGAVYK"	2	"9678_LITAYDQPALGAVYK/2"
+19678	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11140	"LITAYDQPALGAVYK"	2	"9678_LITAYDQPALGAVYK/2"
+19954	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11536	"LPERDEINPEINEALVVEFYNK"	3	"9934_LPERDEINPEINEALVVEFYNK/3"
+19954	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	NA	NA	NA	NA	NA	NA	NA	11536	"LPERDEINPEINEALVVEFYNK"	3	"9934_LPERDEINPEINEALVVEFYNK/3"
+20003	"hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt"	120.235131872818	4070.3	4049.8	4090.8	NA	NA	1	15879	"SGEISLSSWEN"	2	"997_SGEISLSSWEN/2"
+20003	"hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt"	90.125	4130.72	4107.873046875	4148.83984375	1	0.000800459573019417	1	15879	"SGEISLSSWEN"	2	"997_SGEISLSSWEN/2"
diff -r 000000000000 -r fbbbf8c145fc test-data/hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hroest_K120809_Strep0_PlasmaBiolRepl2_R04_SW_filt	Wed Dec 30 20:12:57 2020 +0000
@@ -0,0 +1,2959 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
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+<mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" accession="" version="1.1.0">
+	<cvList count="5">
+		<cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
+		<cv id="UO" fullName="Unit Ontology" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo"/>
+		<cv id="BTO" fullName="BrendaTissue545" version="unknown" URI="http://www.brenda-enzymes.info/ontology/tissue/tree/update/update_files/BrendaTissueOBO"/>
+		<cv id="GO" fullName="Gene Ontology - Slim Versions" version="unknown" URI="http://www.geneontology.org/GO_slims/goslim_goa.obo"/>
+		<cv id="PATO" fullName="Quality ontology" version="unknown" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/quality.obo"/>
+	</cvList>
+	<fileDescription>
+		<fileContent>
+			<cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
+		</fileContent>
+	</fileDescription>
+	<sampleList count="1">
+		<sample id="sa_0" name="">
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+			<cvParam cvRef="MS" accession="MS:1000006" name="sample concentration" value="0" unitAccession="UO:0000175" unitName="gram per liter" unitCvRef="UO" />
+		</sample>
+	</sampleList>
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+		</software>
+		<software id="so_default" version="" >
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+			<cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="OpenSwathWorkflow" />
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+			<cvParam cvRef="MS" accession="MS:1000756" name="FileConverter" />
+		</software>
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+	<instrumentConfigurationList count="1">
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+			<processingMethod order="0" softwareRef="so_dp_sp_0_pm_0">
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+				<cvParam cvRef="MS" accession="MS:1000747" name="completion time" value="2019-12-04+00:25" />
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+				<userParam name="parameter: tr" type="xsd:string" value="data/lib/SpyogenesAssayLibrary_decoy_gpLabel.pqp"/>
+				<userParam name="parameter: tr_type" type="xsd:string" value=""/>
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+				<userParam name="parameter: tr_irt_nonlinear" type="xsd:string" value=""/>
+				<userParam name="parameter: rt_norm" type="xsd:string" value=""/>
+				<userParam name="parameter: swath_windows_file" type="xsd:string" value="data/lib/strep_win.txt"/>
+				<userParam name="parameter: sort_swath_maps" type="xsd:string" value="true"/>
+				<userParam name="parameter: use_ms1_traces" type="xsd:string" value="false"/>
+				<userParam name="parameter: enable_uis_scoring" type="xsd:string" value="false"/>
+				<userParam name="parameter: out_features" type="xsd:string" value=""/>
+				<userParam name="parameter: out_tsv" type="xsd:string" value=""/>
+				<userParam name="parameter: out_osw" type="xsd:string" value="data/results/hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW.osw"/>
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+				<userParam name="parameter: out_qc" type="xsd:string" value=""/>
+				<userParam name="parameter: min_upper_edge_dist" type="xsd:double" value="0"/>
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+				<userParam name="parameter: readOptions" type="xsd:string" value="cacheWorkingInMemory"/>
+				<userParam name="parameter: mz_correction_function" type="xsd:string" value="none"/>
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+				<userParam name="parameter: ms1_isotopes" type="xsd:integer" value="0"/>
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+				<userParam name="parameter: Calibration:ms1_im_calibration" type="xsd:string" value="false"/>
+				<userParam name="parameter: Calibration:im_correction_function" type="xsd:string" value="linear"/>
+				<userParam name="parameter: Calibration:debug_im_file" type="xsd:string" value=""/>
+				<userParam name="parameter: Calibration:debug_mz_file" type="xsd:string" value=""/>
+				<userParam name="parameter: Library:retentionTimeInterpretation" type="xsd:string" value="iRT"/>
+				<userParam name="parameter: Library:override_group_label_check" type="xsd:string" value="false"/>
+				<userParam name="parameter: Library:force_invalid_mods" type="xsd:string" value="false"/>
+				<userParam name="parameter: RTNormalization:alignmentMethod" type="xsd:string" value="linear"/>
+				<userParam name="parameter: RTNormalization:outlierMethod" type="xsd:string" value="iter_residual"/>
+				<userParam name="parameter: RTNormalization:useIterativeChauvenet" type="xsd:string" value="false"/>
+				<userParam name="parameter: RTNormalization:RANSACMaxIterations" type="xsd:integer" value="1000"/>
+				<userParam name="parameter: RTNormalization:RANSACMaxPercentRTThreshold" type="xsd:integer" value="3"/>
+				<userParam name="parameter: RTNormalization:RANSACSamplingSize" type="xsd:integer" value="10"/>
+				<userParam name="parameter: RTNormalization:estimateBestPeptides" type="xsd:string" value="false"/>
+				<userParam name="parameter: RTNormalization:InitialQualityCutoff" type="xsd:double" value="0.5"/>
+				<userParam name="parameter: RTNormalization:OverallQualityCutoff" type="xsd:double" value="5.5"/>
+				<userParam name="parameter: RTNormalization:NrRTBins" type="xsd:integer" value="10"/>
+				<userParam name="parameter: RTNormalization:MinPeptidesPerBin" type="xsd:integer" value="1"/>
+				<userParam name="parameter: RTNormalization:MinBinsFilled" type="xsd:integer" value="8"/>
+				<userParam name="parameter: RTNormalization:lowess:span" type="xsd:double" value="0.666666666666667"/>
+				<userParam name="parameter: RTNormalization:b_spline:num_nodes" type="xsd:integer" value="5"/>
+				<userParam name="parameter: Scoring:stop_report_after_feature" type="xsd:integer" value="5"/>
+				<userParam name="parameter: Scoring:rt_normalization_factor" type="xsd:double" value="100"/>
+				<userParam name="parameter: Scoring:quantification_cutoff" type="xsd:double" value="0"/>
+				<userParam name="parameter: Scoring:write_convex_hull" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:spectrum_addition_method" type="xsd:string" value="simple"/>
+				<userParam name="parameter: Scoring:add_up_spectra" type="xsd:integer" value="1"/>
+				<userParam name="parameter: Scoring:spacing_for_spectra_resampling" type="xsd:double" value="0.005"/>
+				<userParam name="parameter: Scoring:uis_threshold_sn" type="xsd:integer" value="0"/>
+				<userParam name="parameter: Scoring:uis_threshold_peak_area" type="xsd:integer" value="0"/>
+				<userParam name="parameter: Scoring:scoring_model" type="xsd:string" value="default"/>
+				<userParam name="parameter: Scoring:im_extra_drift" type="xsd:double" value="0"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:stop_after_feature" type="xsd:integer" value="-1"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:min_peak_width" type="xsd:double" value="-1"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:peak_integration" type="xsd:string" value="original"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:background_subtraction" type="xsd:string" value="none"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:recalculate_peaks" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:use_precursors" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:use_consensus" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:recalculate_peaks_max_z" type="xsd:double" value="0.75"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:minimal_quality" type="xsd:double" value="-1.5"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:resample_boundary" type="xsd:double" value="15"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:compute_peak_quality" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:compute_peak_shape_metrics" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:compute_total_mi" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:boundary_selection_method" type="xsd:string" value="largest"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:sgolay_frame_length" type="xsd:integer" value="11"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:sgolay_polynomial_order" type="xsd:integer" value="3"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:gauss_width" type="xsd:double" value="30"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:use_gauss" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:peak_width" type="xsd:double" value="-1"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:signal_to_noise" type="xsd:double" value="0.1"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:write_sn_log_messages" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:remove_overlapping_peaks" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:method" type="xsd:string" value="corrected"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakIntegrator:integration_type" type="xsd:string" value="intensity_sum"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakIntegrator:baseline_type" type="xsd:string" value="base_to_base"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakIntegrator:fit_EMG" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:DIAScoring:dia_extraction_window" type="xsd:double" value="0.05"/>
+				<userParam name="parameter: Scoring:DIAScoring:dia_extraction_unit" type="xsd:string" value="Th"/>
+				<userParam name="parameter: Scoring:DIAScoring:dia_centroided" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:DIAScoring:dia_byseries_intensity_min" type="xsd:double" value="300"/>
+				<userParam name="parameter: Scoring:DIAScoring:dia_byseries_ppm_diff" type="xsd:double" value="10"/>
+				<userParam name="parameter: Scoring:DIAScoring:dia_nr_isotopes" type="xsd:integer" value="4"/>
+				<userParam name="parameter: Scoring:DIAScoring:dia_nr_charges" type="xsd:integer" value="4"/>
+				<userParam name="parameter: Scoring:DIAScoring:peak_before_mono_max_ppm_diff" type="xsd:double" value="20"/>
+				<userParam name="parameter: Scoring:EMGScoring:max_iteration" type="xsd:integer" value="10"/>
+				<userParam name="parameter: Scoring:Scores:use_shape_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_coelution_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_rt_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_library_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_intensity_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_nr_peaks_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_total_xic_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_total_mi_score" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:Scores:use_sn_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_mi_score" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:Scores:use_dia_scores" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_ms1_correlation" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:Scores:use_sonar_scores" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:Scores:use_ion_mobility_scores" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:Scores:use_ms1_fullscan" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:Scores:use_ms1_mi" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:Scores:use_uis_scores" type="xsd:string" value="false"/>
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+				<userParam name="parameter: log" type="xsd:string" value=""/>
+				<userParam name="parameter: debug" type="xsd:integer" value="0"/>
+				<userParam name="parameter: threads" type="xsd:integer" value="1"/>
+				<userParam name="parameter: no_progress" type="xsd:string" value="false"/>
+				<userParam name="parameter: force" type="xsd:string" value="false"/>
+				<userParam name="parameter: test" type="xsd:string" value="false"/>
+				<userParam name="parameter: in_type" type="xsd:string" value="mzML"/>
+				<userParam name="parameter: UID_postprocessing" type="xsd:string" value="ensure"/>
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+				<userParam name="parameter: out_type" type="xsd:string" value=""/>
+				<userParam name="parameter: TIC_DTA2D" type="xsd:string" value="false"/>
+				<userParam name="parameter: MGF_compact" type="xsd:string" value="false"/>
+				<userParam name="parameter: force_MaxQuant_compatibility" type="xsd:string" value="false"/>
+				<userParam name="parameter: convert_to_chromatograms" type="xsd:string" value="false"/>
+				<userParam name="parameter: force_TPP_compatibility" type="xsd:string" value="false"/>
+				<userParam name="parameter: change_im_format" type="xsd:string" value="none"/>
+				<userParam name="parameter: write_scan_index" type="xsd:string" value="true"/>
+				<userParam name="parameter: lossy_compression" type="xsd:string" value="false"/>
+				<userParam name="parameter: lossy_mass_accuracy" type="xsd:double" value="-1"/>
+				<userParam name="parameter: process_lowmemory" type="xsd:string" value="false"/>
+				<userParam name="parameter: NET_executable" type="xsd:string" value=""/>
+				<userParam name="parameter: ThermoRaw_executable" type="xsd:string" value="ThermoRawFileParser.exe"/>
+				<userParam name="parameter: no_peak_picking" type="xsd:string" value="false"/>
+			</processingMethod>
+		</dataProcessing>
+	</dataProcessingList>
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+							<userParam name="peptide_sequence" type="xsd:string" value="SGEISLSSWEN"/>
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+					</precursor>
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+						</isolationWindow>
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+								<cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2" />
+							</selectedIon>
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+						<activation>
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+							<userParam name="peptide_sequence" type="xsd:string" value="SGEISLSSWEN"/>
+						</activation>
+					</precursor>
+					<product>
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+						</isolationWindow>
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+							<userParam name="peptide_sequence" type="xsd:string" value="VITMPAGVELTNNNNVITVK"/>
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diff -r 000000000000 -r fbbbf8c145fc test-data/hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hroest_K120809_Strep10_PlasmaBiolRepl2_R04_SW_filt	Wed Dec 30 20:12:57 2020 +0000
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+				<userParam name="parameter: Calibration:debug_mz_file" type="xsd:string" value=""/>
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+				<userParam name="parameter: Library:force_invalid_mods" type="xsd:string" value="false"/>
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+				<userParam name="parameter: RTNormalization:outlierMethod" type="xsd:string" value="iter_residual"/>
+				<userParam name="parameter: RTNormalization:useIterativeChauvenet" type="xsd:string" value="false"/>
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+				<userParam name="parameter: Scoring:add_up_spectra" type="xsd:integer" value="1"/>
+				<userParam name="parameter: Scoring:spacing_for_spectra_resampling" type="xsd:double" value="0.005"/>
+				<userParam name="parameter: Scoring:uis_threshold_sn" type="xsd:integer" value="0"/>
+				<userParam name="parameter: Scoring:uis_threshold_peak_area" type="xsd:integer" value="0"/>
+				<userParam name="parameter: Scoring:scoring_model" type="xsd:string" value="default"/>
+				<userParam name="parameter: Scoring:im_extra_drift" type="xsd:double" value="0"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:stop_after_feature" type="xsd:integer" value="-1"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:min_peak_width" type="xsd:double" value="-1"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:peak_integration" type="xsd:string" value="original"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:background_subtraction" type="xsd:string" value="none"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:recalculate_peaks" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:use_precursors" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:use_consensus" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:recalculate_peaks_max_z" type="xsd:double" value="0.75"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:minimal_quality" type="xsd:double" value="-1.5"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:resample_boundary" type="xsd:double" value="15"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:compute_peak_quality" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:compute_peak_shape_metrics" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:compute_total_mi" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:boundary_selection_method" type="xsd:string" value="largest"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:sgolay_frame_length" type="xsd:integer" value="11"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:sgolay_polynomial_order" type="xsd:integer" value="3"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:gauss_width" type="xsd:double" value="30"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:use_gauss" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:peak_width" type="xsd:double" value="-1"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:signal_to_noise" type="xsd:double" value="0.1"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:write_sn_log_messages" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:remove_overlapping_peaks" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakPickerMRM:method" type="xsd:string" value="corrected"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakIntegrator:integration_type" type="xsd:string" value="intensity_sum"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakIntegrator:baseline_type" type="xsd:string" value="base_to_base"/>
+				<userParam name="parameter: Scoring:TransitionGroupPicker:PeakIntegrator:fit_EMG" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:DIAScoring:dia_extraction_window" type="xsd:double" value="0.05"/>
+				<userParam name="parameter: Scoring:DIAScoring:dia_extraction_unit" type="xsd:string" value="Th"/>
+				<userParam name="parameter: Scoring:DIAScoring:dia_centroided" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:DIAScoring:dia_byseries_intensity_min" type="xsd:double" value="300"/>
+				<userParam name="parameter: Scoring:DIAScoring:dia_byseries_ppm_diff" type="xsd:double" value="10"/>
+				<userParam name="parameter: Scoring:DIAScoring:dia_nr_isotopes" type="xsd:integer" value="4"/>
+				<userParam name="parameter: Scoring:DIAScoring:dia_nr_charges" type="xsd:integer" value="4"/>
+				<userParam name="parameter: Scoring:DIAScoring:peak_before_mono_max_ppm_diff" type="xsd:double" value="20"/>
+				<userParam name="parameter: Scoring:EMGScoring:max_iteration" type="xsd:integer" value="10"/>
+				<userParam name="parameter: Scoring:Scores:use_shape_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_coelution_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_rt_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_library_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_intensity_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_nr_peaks_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_total_xic_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_total_mi_score" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:Scores:use_sn_score" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_mi_score" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:Scores:use_dia_scores" type="xsd:string" value="true"/>
+				<userParam name="parameter: Scoring:Scores:use_ms1_correlation" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:Scores:use_sonar_scores" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:Scores:use_ion_mobility_scores" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:Scores:use_ms1_fullscan" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:Scores:use_ms1_mi" type="xsd:string" value="false"/>
+				<userParam name="parameter: Scoring:Scores:use_uis_scores" type="xsd:string" value="false"/>
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+				<userParam name="parameter: log" type="xsd:string" value=""/>
+				<userParam name="parameter: debug" type="xsd:integer" value="0"/>
+				<userParam name="parameter: threads" type="xsd:integer" value="1"/>
+				<userParam name="parameter: no_progress" type="xsd:string" value="false"/>
+				<userParam name="parameter: force" type="xsd:string" value="false"/>
+				<userParam name="parameter: test" type="xsd:string" value="false"/>
+				<userParam name="parameter: in_type" type="xsd:string" value="mzML"/>
+				<userParam name="parameter: UID_postprocessing" type="xsd:string" value="ensure"/>
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+				<userParam name="parameter: out_type" type="xsd:string" value=""/>
+				<userParam name="parameter: TIC_DTA2D" type="xsd:string" value="false"/>
+				<userParam name="parameter: MGF_compact" type="xsd:string" value="false"/>
+				<userParam name="parameter: force_MaxQuant_compatibility" type="xsd:string" value="false"/>
+				<userParam name="parameter: convert_to_chromatograms" type="xsd:string" value="false"/>
+				<userParam name="parameter: force_TPP_compatibility" type="xsd:string" value="false"/>
+				<userParam name="parameter: change_im_format" type="xsd:string" value="none"/>
+				<userParam name="parameter: write_scan_index" type="xsd:string" value="true"/>
+				<userParam name="parameter: lossy_compression" type="xsd:string" value="false"/>
+				<userParam name="parameter: lossy_mass_accuracy" type="xsd:double" value="-1"/>
+				<userParam name="parameter: process_lowmemory" type="xsd:string" value="false"/>
+				<userParam name="parameter: NET_executable" type="xsd:string" value=""/>
+				<userParam name="parameter: ThermoRaw_executable" type="xsd:string" value="ThermoRawFileParser.exe"/>
+				<userParam name="parameter: no_peak_picking" type="xsd:string" value="false"/>
+			</processingMethod>
+		</dataProcessing>
+	</dataProcessingList>
+	<run id="ru_0" defaultInstrumentConfigurationRef="ic_0" sampleRef="sa_0">
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+							<userParam name="peptide_sequence" type="xsd:string" value="SGEISLSSWEN"/>
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+						</isolationWindow>
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+						</activation>
+					</precursor>
+					<product>
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+						<activation>
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+							<userParam name="peptide_sequence" type="xsd:string" value="VVAGGELFKESVVVNDK"/>
+						</activation>
+					</precursor>
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+						</isolationWindow>
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+						</isolationWindow>
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+							</selectedIon>
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+						<activation>
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+							<userParam name="peptide_sequence" type="xsd:string" value="VITMPAGVELTNNNNVITVK"/>
+						</activation>
+					</precursor>
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diff -r 000000000000 -r fbbbf8c145fc test-data/merged.osw
Binary file test-data/merged.osw has changed