Mercurial > repos > galaxyp > eggnog_mapper
comparison eggnog_mapper.xml @ 10:bcb4895b8b55 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper commit 622d8d475193f3717d26f45fd7c8f5868e9a2d0d
author | galaxyp |
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date | Tue, 07 Jun 2022 14:56:44 +0000 |
parents | 63662ae295d6 |
children | 5a30ae278db0 |
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9:63662ae295d6 | 10:bcb4895b8b55 |
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1 <tool id="eggnog_mapper" name="eggNOG Mapper" version="@VERSION@+galaxy1"> | 1 <tool id="eggnog_mapper" name="eggNOG Mapper" version="@VERSION@+galaxy2"> |
2 <description>functional sequence annotation by orthology</description> | 2 <description>functional sequence annotation by orthology</description> |
3 <macros> | 3 <macros> |
4 <import>eggnog_macros.xml</import> | 4 <import>eggnog_macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
79 </when> | 79 </when> |
80 <when value="genome"> | 80 <when value="genome"> |
81 <param name="translate" type="boolean" truevalue="--translate" falsevalue="" checked="false" | 81 <param name="translate" type="boolean" truevalue="--translate" falsevalue="" checked="false" |
82 label="Translate predicted CDS from blastx hits to proteins"/> | 82 label="Translate predicted CDS from blastx hits to proteins"/> |
83 <param argument="--genepred" type="select" label="Type of sequences"> | 83 <param argument="--genepred" type="select" label="Type of sequences"> |
84 <option value="search" selected="true">Inferred from Diamond/MMseqs2 blastx hits</option> | 84 <option value="search">Inferred from Diamond/MMseqs2 blastx hits</option> |
85 <option value="prodigal">Performed using Prodigal</option> | 85 <option value="prodigal" selected="true">Performed using Prodigal</option> |
86 </param> | 86 </param> |
87 </when> | 87 </when> |
88 <when value="metagenome"> | 88 <when value="metagenome"> |
89 <param name="translate" type="boolean" truevalue="--translate" falsevalue="" checked="false" | 89 <param name="translate" type="boolean" truevalue="--translate" falsevalue="" checked="false" |
90 label="Translate predicted CDS from blastx hits to proteins"/> | 90 label="Translate predicted CDS from blastx hits to proteins"/> |
91 <param argument="--genepred" type="select" label="Type of sequences"> | 91 <param argument="--genepred" type="select" label="Type of sequences"> |
92 <option value="search" selected="true">Inferred from Diamond/MMseqs2 blastx hits</option> | 92 <option value="search">Inferred from Diamond/MMseqs2 blastx hits</option> |
93 <option value="prodigal">Performed using Prodigal</option> | 93 <option value="prodigal" selected="true">Performed using Prodigal</option> |
94 </param> | 94 </param> |
95 </when> | 95 </when> |
96 </conditional> | 96 </conditional> |
97 <param name="eggnog_data" type="select" label="Version of eggNOG Database"> | 97 <param name="eggnog_data" type="select" label="Version of eggNOG Database"> |
98 <options from_data_table="eggnog_mapper_db_versioned"> | 98 <options from_data_table="eggnog_mapper_db_versioned"> |