Mercurial > repos > galaxyp > eggnog_mapper
diff tool-data/eggnog_mapper_db.loc.sample @ 6:3cb37af59360 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper commit 2200885b5049b2d952959001c8a9b5ae5c62bee5"
| author | galaxyp |
|---|---|
| date | Sat, 05 Sep 2020 07:21:28 +0000 |
| parents | a5a3bdd0954b |
| children |
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--- a/tool-data/eggnog_mapper_db.loc.sample Mon Nov 11 11:50:36 2019 -0500 +++ b/tool-data/eggnog_mapper_db.loc.sample Sat Sep 05 07:21:28 2020 +0000 @@ -1,25 +1,22 @@ #This is a sample file distributed with Galaxy that enables tools -#to use a directory of eggnog_mapper data files. +#to use a directory of eggnog_mapper data files. # # eggnog-mapper requires the following files to be installed in the data directory: # https://github.com/jhcepas/eggnog-mapper/blob/master/data/og2level.tsv.gz -# http://eggnogdb.embl.de/download/eggnog_4.5/eggnog-mapper-data/eggnog.db.gz -# http://eggnogdb.embl.de/download/eggnog_4.5/eggnog-mapper-data/OG_fasta.tar.gz -# In addition individual HMM DBs can be installed from: -# http://eggnogdb.embl.de/download/eggnog_4.5/eggnog-mapper-data/hmmdb_levels/ +# http://eggnog5.embl.de/download/emapperdb-5.0.0/eggnog.db.gz # A complete diamond database is available from: -# http://eggnogdb.embl.de/download/eggnog_4.5/eggnog-mapper-data/eggnog_proteins.dmnd.gz +# http://eggnog5.embl.de/download/emapperdb-5.0.0/eggnog_proteins.dmnd.gz # -# The python script download_eggnog_data.py, +# The python script download_eggnog_data.py, # included with eggnog_mapper, can be used to download the files to the correct directory # # The near-equivalence of columns "value" and "db" is needed for the tests to work, # and for the setting of --data_dir to the parent directory of eggnog.db -# The complicated eggNOG database structure makes passing custom HMM databases somewhat tricky. +# The complicated eggNOG database structure makes passing custom HMM databases somewhat tricky. # See test-data/cached_locally/eggnog_mapper.loc for how this was done with the included test databases -# In all other cases, when the appropriate HMM database (for example, "thaNOG") was downloaded from eggnogdb.embl.de, +# In all other cases, when the appropriate HMM database (for example, "thaNOG") was downloaded from eggnogdb.embl.de, # value and db should be the same (in the example, both should be "thaNOG") # # -#db_version name path -#4.5.1 eggnog_4.5.1 /path/to/directory/that/contains/eggnog.db +#db_version name path +#5.0 eggnog_5.0 /path/to/directory/that/contains/eggnog.db