Mercurial > repos > galaxyp > eggnog_mapper

diff eggnog_mapper.xml @ 11:5a30ae278db0 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper commit 75035b2919ce95fa8d3b785d86c7c7c9da531db2
author galaxyp
date Mon, 20 Jun 2022 12:49:52 +0000
parents bcb4895b8b55
children 9d1fbff733cf
line wrap: on
line diff
--- a/eggnog_mapper.xml	Tue Jun 07 14:56:44 2022 +0000
+++ b/eggnog_mapper.xml	Mon Jun 20 12:49:52 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="eggnog_mapper" name="eggNOG Mapper" version="@VERSION@+galaxy2">
+<tool id="eggnog_mapper" name="eggNOG Mapper" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>functional sequence annotation by orthology</description>
     <macros>
         <import>eggnog_macros.xml</import>
@@ -319,14 +319,15 @@
         </data>
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="1">
             <param name="input" value="Nmar_0135.fa" ftype="fasta"/>
             <param name="eggnog_data" value="@EGGNOG_DB_VERSION@"/>
             <param name="no_annot" value="true"/>
             <param name="no_file_comments" value="true"/>
             <output name="seed_orthologs" file="DIA_nlim.emapper.seed_orthologs" ftype="tabular" compare="sim_size"/>
+            <expand macro="stdout_assertion"/>
         </test>
-        <test>
+        <test expect_num_outputs="3">
             <param name="input" value="Nmar_0135.fa" ftype="fasta"/>
             <param name="eggnog_data" value="@EGGNOG_DB_VERSION@"/> <!-- not passed in test, but required for test to work -->
             <param name="report_orthologs" value="true"/>
@@ -334,8 +335,9 @@
             <output name="seed_orthologs" file="DIA_nlim.emapper.seed_orthologs" ftype="tabular" compare="sim_size"/>
             <output name="annotations" file="DIA_nlim.emapper.annotations" ftype="tabular" compare="sim_size"/>
             <output name="annotations_orthologs" file="DIA_nlim.emapper.annotations_orthologs" ftype="tabular"/>
+            <expand macro="stdout_assertion"/>
         </test>
-        <test>
+        <test expect_num_outputs="3">
             <param name="input" value="Nmar_0135.fa" ftype="fasta"/>
             <param name="eggnog_data" value="@EGGNOG_DB_VERSION@"/> <!-- not passed in test, but required for test to work -->
             <param name="report_orthologs" value="true"/>
@@ -346,8 +348,9 @@
             <output name="seed_orthologs" file="scoped.emapper.seed_orthologs" ftype="tabular" compare="sim_size"/>
             <output name="annotations" file="scoped.emapper.annotations" ftype="tabular" compare="sim_size"/>
             <output name="annotations_orthologs" file="scoped.emapper.annotations_orthologs" ftype="tabular"/>
+            <expand macro="stdout_assertion"/>
         </test>
-        <test>
+        <test expect_num_outputs="3">
             <param name="input" value="Nmar_0135.fa" ftype="fasta"/>
             <param name="eggnog_data" value="@EGGNOG_DB_VERSION@"/> <!-- not passed in test, but required for test to work -->
             <section name="seed_ortho_options">
@@ -361,6 +364,7 @@
             <output name="seed_orthologs" file="DIA_nlim.emapper.seed_orthologs" ftype="tabular" compare="sim_size"/>
             <output name="annotations" file="DIA_nlim.emapper.annotations" ftype="tabular" compare="sim_size"/>
             <output name="annotations_orthologs" file="DIA_nlim.emapper.annotations_orthologs" ftype="tabular"/>
+            <expand macro="stdout_assertion"/>
         </test>
         <!-- not enabled as it requires a specific .db file, hard to minimize -->
         <!--test>