Mercurial > repos > galaxyp > eggnog_mapper

view test-data/make_comp_file.sh @ 13:844fa988236b draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper commit 468bd31b8858adbba2854f118e4cbe31f4cd68cb
author galaxyp
date Mon, 04 Sep 2023 12:47:09 +0000
parents 3cb37af59360
children
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#!/bin/bash

base_path=$1

emapper.py \
    -i $base_path/test-data/nlim_fragment.fasta \
    --output DIA_nlim \
    --output_dir $base_path/test-data \
    --override \
    -m diamond \
    --data_dir $base_path/test-data/cached_locally \
    --no_file_comments \
    --no_annot