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view test-data/eggnogg_tiny_taxa.sh @ 8:96cac424c870 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper commit e45c15081260025e470d23975ef5a734d3f8fc66"
author galaxyp
date Tue, 25 Jan 2022 13:51:50 +0000
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#!/bin/bash

# Script adapted from https://github.com/galaxyproteomics/egglet to produce a minimal eggnog 5.0.2 database

sqlite3 $1 << "EOF"

CREATE TEMP TABLE species
AS SELECT * FROM species
WHERE taxid in (1131266, 436308);

CREATE TEMP TABLE synonym
AS SELECT * FROM synonym
WHERE taxid in (1131266, 436308);

CREATE TEMP TABLE merged
AS SELECT * FROM merged
WHERE taxid_old in (1131266, 436308);

CREATE TEMP TABLE stats
AS SELECT * FROM stats;

.backup temp eggnog_tiny_taxa.db
EOF