Mercurial > repos > galaxyp > fragpipe

comparison msfragger_macros.xml @ 6:2e667f0ec33c draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/fragpipe commit 3fe4cafecf2b25f602915c638b0d6993d957e1e6
author galaxyp
date Sun, 30 Mar 2025 23:01:00 +0000
parents 048390db1932
children
comparison
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5:048390db1932 6:2e667f0ec33c
59 <expand macro="modeling_output"/> 59 <expand macro="modeling_output"/>
60 <expand macro="advanced_options"/> 60 <expand macro="advanced_options"/>
61 </xml> 61 </xml>
62 <xml name="msfragger_nonspecific_HLA"> 62 <xml name="msfragger_nonspecific_HLA">
63 <expand macro="search_tolerances" precursor_mass_lower="-20" precursor_mass_upper="20"/> 63 <expand macro="search_tolerances" precursor_mass_lower="-20" precursor_mass_upper="20"/>
64 <expand macro="digestion" stricttrypsin="false" nonspecific="true" digest_max_length="25" termini_0="true" termini_2="false"/> 64 <expand macro="digestion" stricttrypsin="false" nonspecific="true" digest_max_length="25" termini_0="true" termini_2="false" digest_mass_range_min="200.0"/>
65 <expand macro="variable_modification"/> 65 <expand macro="variable_modification"/>
66 <expand macro="static_modification"/> 66 <expand macro="static_modification"/>
67 <expand macro="glyco_labile"/> 67 <expand macro="glyco_labile"/>
68 <expand macro="mass_offsets"/> 68 <expand macro="mass_offsets"/>
69 <expand macro="spectrum_processing" transform_none="false" transform_sqrt="true"/> 69 <expand macro="spectrum_processing" transform_none="false" transform_sqrt="true"/>