diff test-data/gffcompare_annotated.gtf @ 0:7e572e148175 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/gffcompare_to_bed commit 321b217382f6be33bd77c7dbb51c8caf5fa50afe
author galaxyp
date Thu, 11 Jan 2018 11:16:51 -0500
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gffcompare_annotated.gtf	Thu Jan 11 11:16:51 2018 -0500
@@ -0,0 +1,1024 @@
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+1	StringTie	transcript	9942025	9944103	.	-	.	transcript_id "STRG.229.6"; gene_id "STRG.229"; gene_name "Snhg6"; xloc "XLOC_000389"; cmp_ref "ENSMUST00000182580"; class_code "j"; tss_id "TSS990";
+1	StringTie	exon	9942025	9942155	.	-	.	transcript_id "STRG.229.6"; gene_id "STRG.229"; exon_number "1";
+1	StringTie	exon	9942323	9942717	.	-	.	transcript_id "STRG.229.6"; gene_id "STRG.229"; exon_number "2";
+1	StringTie	exon	9944020	9944103	.	-	.	transcript_id "STRG.229.6"; gene_id "STRG.229"; exon_number "3";
+1	StringTie	transcript	9942025	9944103	.	-	.	transcript_id "STRG.229.4"; gene_id "STRG.229"; gene_name "Snhg6"; xloc "XLOC_000389"; ref_gene_id "ENSMUSG00000098234"; cmp_ref "ENSMUST00000182498"; class_code "="; tss_id "TSS990";
+1	StringTie	exon	9942025	9942391	.	-	.	transcript_id "STRG.229.4"; gene_id "STRG.229"; exon_number "1";
+1	StringTie	exon	9942610	9942717	.	-	.	transcript_id "STRG.229.4"; gene_id "STRG.229"; exon_number "2";
+1	StringTie	exon	9944020	9944103	.	-	.	transcript_id "STRG.229.4"; gene_id "STRG.229"; exon_number "3";
+1	StringTie	transcript	9942025	9944103	.	-	.	transcript_id "STRG.229.3"; gene_id "STRG.229"; gene_name "Snhg6"; xloc "XLOC_000389"; cmp_ref "ENSMUST00000182580"; class_code "j"; tss_id "TSS990";
+1	StringTie	exon	9942025	9942155	.	-	.	transcript_id "STRG.229.3"; gene_id "STRG.229"; exon_number "1";
+1	StringTie	exon	9942323	9942384	.	-	.	transcript_id "STRG.229.3"; gene_id "STRG.229"; exon_number "2";
+1	StringTie	exon	9942610	9942717	.	-	.	transcript_id "STRG.229.3"; gene_id "STRG.229"; exon_number "3";
+1	StringTie	exon	9944020	9944103	.	-	.	transcript_id "STRG.229.3"; gene_id "STRG.229"; exon_number "4";
+1	StringTie	transcript	9942025	9944117	.	-	.	transcript_id "STRG.229.2"; gene_id "STRG.229"; gene_name "Snhg6"; xloc "XLOC_000389"; ref_gene_id "ENSMUSG00000098234"; cmp_ref "ENSMUST00000182742"; class_code "="; tss_id "TSS990";
+1	StringTie	exon	9942025	9942149	.	-	.	transcript_id "STRG.229.2"; gene_id "STRG.229"; exon_number "1";
+1	StringTie	exon	9942323	9942391	.	-	.	transcript_id "STRG.229.2"; gene_id "STRG.229"; exon_number "2";
+1	StringTie	exon	9942610	9942717	.	-	.	transcript_id "STRG.229.2"; gene_id "STRG.229"; exon_number "3";
+1	StringTie	exon	9944020	9944117	.	-	.	transcript_id "STRG.229.2"; gene_id "STRG.229"; exon_number "4";
+1	StringTie	transcript	86908793	86909683	.	-	.	transcript_id "STRG.2297.1"; gene_id "STRG.2297"; gene_name "Dis3l2"; xloc "XLOC_000527"; cmp_ref "ENSMUST00000168237"; class_code "i"; tss_id "TSS1418";
+1	StringTie	exon	86908793	86909111	.	-	.	transcript_id "STRG.2297.1"; gene_id "STRG.2297"; exon_number "1";
+1	StringTie	exon	86909399	86909683	.	-	.	transcript_id "STRG.2297.1"; gene_id "STRG.2297"; exon_number "2";
+1	StringTie	transcript	193145391	193173087	.	+	.	transcript_id "STRG.5202.1"; gene_id "STRG.5202"; gene_name "Irf6"; xloc "XLOC_000382"; cmp_ref "ENSMUST00000076521"; class_code "j"; tss_id "TSS969";
+1	StringTie	exon	193145391	193145432	.	+	.	transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "1";
+1	StringTie	exon	193157216	193157392	.	+	.	transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "2";
+1	StringTie	exon	193161613	193161817	.	+	.	transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "3";
+1	StringTie	exon	193162602	193162730	.	+	.	transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "4";
+1	StringTie	exon	193165766	193165924	.	+	.	transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "5";
+1	StringTie	exon	193167439	193167831	.	+	.	transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "6";
+1	StringTie	exon	193168517	193168635	.	+	.	transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "7";
+1	StringTie	exon	193169282	193173087	.	+	.	transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "8";
+1	StringTie	transcript	193156669	193164181	.	+	.	transcript_id "STRG.5202.2"; gene_id "STRG.5202"; gene_name "Irf6"; xloc "XLOC_000382"; ref_gene_id "ENSMUSG00000026638"; cmp_ref "ENSMUST00000140066"; class_code "="; tss_id "TSS970";
+1	StringTie	exon	193156669	193157392	.	+	.	transcript_id "STRG.5202.2"; gene_id "STRG.5202"; exon_number "1";
+1	StringTie	exon	193161613	193161817	.	+	.	transcript_id "STRG.5202.2"; gene_id "STRG.5202"; exon_number "2";
+1	StringTie	exon	193162602	193164181	.	+	.	transcript_id "STRG.5202.2"; gene_id "STRG.5202"; exon_number "3";
+1	StringTie	transcript	193167975	193173087	.	+	.	transcript_id "STRG.5202.3"; gene_id "STRG.5202"; gene_name "Irf6"; xloc "XLOC_000382"; cmp_ref "ENSMUST00000076521"; class_code "j"; tss_id "TSS971";
+1	StringTie	exon	193167975	193168131	.	+	.	transcript_id "STRG.5202.3"; gene_id "STRG.5202"; exon_number "1";
+1	StringTie	exon	193168517	193168635	.	+	.	transcript_id "STRG.5202.3"; gene_id "STRG.5202"; exon_number "2";
+1	StringTie	exon	193169282	193173087	.	+	.	transcript_id "STRG.5202.3"; gene_id "STRG.5202"; exon_number "3";
+1	StringTie	transcript	193168503	193169489	.	+	.	transcript_id "STRG.5202.4"; gene_id "STRG.5202"; gene_name "Irf6"; xloc "XLOC_000382"; ref_gene_id "ENSMUSG00000026638"; cmp_ref "ENSMUST00000193772"; class_code "="; tss_id "TSS972";
+1	StringTie	exon	193168503	193168635	.	+	.	transcript_id "STRG.5202.4"; gene_id "STRG.5202"; exon_number "1";
+1	StringTie	exon	193169282	193169489	.	+	.	transcript_id "STRG.5202.4"; gene_id "STRG.5202"; exon_number "2";
+2	StringTie	transcript	119749139	119749844	.	+	.	transcript_id "STRG.8811.1"; gene_id "STRG.8811"; gene_name "Itpka"; xloc "XLOC_006614"; cmp_ref "ENSMUST00000028758"; class_code "j"; tss_id "TSS15414";
+2	StringTie	exon	119749139	119749286	.	+	.	transcript_id "STRG.8811.1"; gene_id "STRG.8811"; exon_number "1";
+2	StringTie	exon	119749362	119749578	.	+	.	transcript_id "STRG.8811.1"; gene_id "STRG.8811"; exon_number "2";
+2	StringTie	exon	119749673	119749844	.	+	.	transcript_id "STRG.8811.1"; gene_id "STRG.8811"; exon_number "3";
+2	StringTie	transcript	119972464	120018974	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; gene_name "Mapkbp1"; xloc "XLOC_006617"; cmp_ref "ENSMUST00000066058"; class_code "j"; tss_id "TSS15426";
+2	StringTie	exon	119972464	119972480	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "1";
+2	StringTie	exon	119972946	119973168	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "2";
+2	StringTie	exon	119998482	119998573	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "3";
+2	StringTie	exon	120010743	120010805	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "4";
+2	StringTie	exon	120011002	120011059	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "5";
+2	StringTie	exon	120011933	120012103	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "6";
+2	StringTie	exon	120012593	120012730	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "7";
+2	StringTie	exon	120012912	120013094	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "8";
+2	StringTie	exon	120013619	120013779	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "9";
+2	StringTie	exon	120014623	120014812	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "10";
+2	StringTie	exon	120015343	120015489	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "11";
+2	StringTie	exon	120015693	120015868	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "12";
+2	StringTie	exon	120016780	120016871	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "13";
+2	StringTie	exon	120017140	120017265	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "14";
+2	StringTie	exon	120017581	120017651	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "15";
+2	StringTie	exon	120017756	120017877	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "16";
+2	StringTie	exon	120018299	120018374	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "17";
+2	StringTie	exon	120018488	120018599	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "18";
+2	StringTie	exon	120018922	120018974	.	+	.	transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "19";
+2	StringTie	transcript	120011687	120013094	.	+	.	transcript_id "STRG.8821.3"; gene_id "STRG.8821"; gene_name "Mapkbp1"; xloc "XLOC_006617"; ref_gene_id "ENSMUSG00000033902"; cmp_ref "ENSMUST00000137760"; class_code "="; tss_id "TSS15427";
+2	StringTie	exon	120011687	120012103	.	+	.	transcript_id "STRG.8821.3"; gene_id "STRG.8821"; exon_number "1";
+2	StringTie	exon	120012593	120012730	.	+	.	transcript_id "STRG.8821.3"; gene_id "STRG.8821"; exon_number "2";
+2	StringTie	exon	120012912	120013094	.	+	.	transcript_id "STRG.8821.3"; gene_id "STRG.8821"; exon_number "3";
+2	StringTie	transcript	120013043	120015605	.	+	.	transcript_id "STRG.8821.2"; gene_id "STRG.8821"; gene_name "Mapkbp1"; xloc "XLOC_006617"; ref_gene_id "ENSMUSG00000033902"; cmp_ref "ENSMUST00000128077"; class_code "="; tss_id "TSS15428";
+2	StringTie	exon	120013043	120013094	.	+	.	transcript_id "STRG.8821.2"; gene_id "STRG.8821"; exon_number "1";
+2	StringTie	exon	120013619	120013779	.	+	.	transcript_id "STRG.8821.2"; gene_id "STRG.8821"; exon_number "2";
+2	StringTie	exon	120014623	120014812	.	+	.	transcript_id "STRG.8821.2"; gene_id "STRG.8821"; exon_number "3";
+2	StringTie	exon	120015343	120015605	.	+	.	transcript_id "STRG.8821.2"; gene_id "STRG.8821"; exon_number "4";
+2	StringTie	transcript	121008403	121016904	.	+	.	transcript_id "STRG.8871.1"; gene_id "STRG.8871"; gene_name "Ccndbp1"; xloc "XLOC_006626"; ref_gene_id "ENSMUSG00000023572"; cmp_ref "ENSMUST00000060455"; class_code "="; tss_id "TSS15463"; p_id "P8181";
+2	StringTie	exon	121008403	121008609	.	+	.	transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "1";
+2	StringTie	exon	121008718	121008777	.	+	.	transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "2";
+2	StringTie	exon	121009043	121009122	.	+	.	transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "3";
+2	StringTie	exon	121009827	121009908	.	+	.	transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "4";
+2	StringTie	exon	121011434	121011530	.	+	.	transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "5";
+2	StringTie	exon	121011683	121011756	.	+	.	transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "6";
+2	StringTie	exon	121012353	121012429	.	+	.	transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "7";
+2	StringTie	exon	121012699	121012976	.	+	.	transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "8";
+2	StringTie	exon	121013958	121014018	.	+	.	transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "9";
+2	StringTie	exon	121016131	121016177	.	+	.	transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "10";
+2	StringTie	exon	121016399	121016904	.	+	.	transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "11";
+2	StringTie	transcript	121008432	121015120	.	+	.	transcript_id "STRG.8871.3"; gene_id "STRG.8871"; gene_name "Ccndbp1"; xloc "XLOC_006626"; ref_gene_id "ENSMUSG00000023572"; cmp_ref "ENSMUST00000099488"; class_code "="; tss_id "TSS15463"; p_id "P8182";
+2	StringTie	exon	121008432	121008609	.	+	.	transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "1";
+2	StringTie	exon	121008718	121008777	.	+	.	transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "2";
+2	StringTie	exon	121009043	121009122	.	+	.	transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "3";
+2	StringTie	exon	121009827	121009908	.	+	.	transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "4";
+2	StringTie	exon	121011434	121011530	.	+	.	transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "5";
+2	StringTie	exon	121011683	121011756	.	+	.	transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "6";
+2	StringTie	exon	121012353	121012429	.	+	.	transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "7";
+2	StringTie	exon	121012699	121012976	.	+	.	transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "8";
+2	StringTie	exon	121013958	121014018	.	+	.	transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "9";
+2	StringTie	exon	121014513	121015120	.	+	.	transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "10";
+2	StringTie	transcript	121008448	121016904	.	+	.	transcript_id "STRG.8871.2"; gene_id "STRG.8871"; gene_name "Ccndbp1"; xloc "XLOC_006626"; ref_gene_id "ENSMUSG00000023572"; cmp_ref "ENSMUST00000099489"; class_code "="; tss_id "TSS15463"; p_id "P8183";
+2	StringTie	exon	121008448	121008777	.	+	.	transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "1";
+2	StringTie	exon	121009043	121009122	.	+	.	transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "2";
+2	StringTie	exon	121009827	121009908	.	+	.	transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "3";
+2	StringTie	exon	121011434	121011530	.	+	.	transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "4";
+2	StringTie	exon	121011683	121011756	.	+	.	transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "5";
+2	StringTie	exon	121012353	121012429	.	+	.	transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "6";
+2	StringTie	exon	121012699	121012976	.	+	.	transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "7";
+2	StringTie	exon	121013958	121014018	.	+	.	transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "8";
+2	StringTie	exon	121016131	121016177	.	+	.	transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "9";
+2	StringTie	exon	121016399	121016904	.	+	.	transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "10";
+2	StringTie	transcript	121008467	121011756	.	+	.	transcript_id "STRG.8871.5"; gene_id "STRG.8871"; gene_name "Ccndbp1"; xloc "XLOC_006626"; cmp_ref "ENSMUST00000060455"; class_code "j"; tss_id "TSS15463";
+2	StringTie	exon	121008467	121008777	.	+	.	transcript_id "STRG.8871.5"; gene_id "STRG.8871"; exon_number "1";
+2	StringTie	exon	121009043	121009122	.	+	.	transcript_id "STRG.8871.5"; gene_id "STRG.8871"; exon_number "2";
+2	StringTie	exon	121009827	121011530	.	+	.	transcript_id "STRG.8871.5"; gene_id "STRG.8871"; exon_number "3";
+2	StringTie	exon	121011683	121011756	.	+	.	transcript_id "STRG.8871.5"; gene_id "STRG.8871"; exon_number "4";
+2	StringTie	transcript	121008467	121012948	.	+	.	transcript_id "STRG.8871.4"; gene_id "STRG.8871"; gene_name "Ccndbp1"; xloc "XLOC_006626"; ref_gene_id "ENSMUSG00000023572"; cmp_ref "ENSMUST00000140468"; class_code "="; tss_id "TSS15463";
+2	StringTie	exon	121008467	121008609	.	+	.	transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "1";
+2	StringTie	exon	121008718	121008777	.	+	.	transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "2";
+2	StringTie	exon	121009043	121009122	.	+	.	transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "3";
+2	StringTie	exon	121009827	121009908	.	+	.	transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "4";
+2	StringTie	exon	121011434	121011558	.	+	.	transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "5";
+2	StringTie	exon	121011683	121011756	.	+	.	transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "6";
+2	StringTie	exon	121012353	121012429	.	+	.	transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "7";
+2	StringTie	exon	121012699	121012948	.	+	.	transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "8";
+2	StringTie	transcript	121008704	121010577	.	+	.	transcript_id "STRG.8871.6"; gene_id "STRG.8871"; gene_name "Ccndbp1"; xloc "XLOC_006626"; ref_gene_id "ENSMUSG00000023572"; contained_in "STRG.8871.5"; cmp_ref "ENSMUST00000151532"; class_code "="; tss_id "TSS15464";
+2	StringTie	exon	121008704	121008777	.	+	.	transcript_id "STRG.8871.6"; gene_id "STRG.8871"; exon_number "1";
+2	StringTie	exon	121009043	121009122	.	+	.	transcript_id "STRG.8871.6"; gene_id "STRG.8871"; exon_number "2";
+2	StringTie	exon	121009827	121010577	.	+	.	transcript_id "STRG.8871.6"; gene_id "STRG.8871"; exon_number "3";
+2	StringTie	transcript	121011055	121011756	.	+	.	transcript_id "STRG.8871.7"; gene_id "STRG.8871"; gene_name "Ccndbp1"; xloc "XLOC_006626"; ref_gene_id "ENSMUSG00000023572"; contained_in "STRG.8871.5"; cmp_ref "ENSMUST00000135036"; class_code "="; tss_id "TSS15465";
+2	StringTie	exon	121011055	121011530	.	+	.	transcript_id "STRG.8871.7"; gene_id "STRG.8871"; exon_number "1";
+2	StringTie	exon	121011683	121011756	.	+	.	transcript_id "STRG.8871.7"; gene_id "STRG.8871"; exon_number "2";
+2	StringTie	transcript	120089175	120154606	.	-	.	transcript_id "STRG.8831.1"; gene_id "STRG.8831"; gene_name "Ehd4"; xloc "XLOC_007147"; ref_gene_id "ENSMUSG00000027293"; cmp_ref "ENSMUST00000028755"; class_code "="; tss_id "TSS16872"; p_id "P8912";
+2	StringTie	exon	120089175	120091684	.	-	.	transcript_id "STRG.8831.1"; gene_id "STRG.8831"; exon_number "1";
+2	StringTie	exon	120096963	120097127	.	-	.	transcript_id "STRG.8831.1"; gene_id "STRG.8831"; exon_number "2";
+2	StringTie	exon	120102020	120102432	.	-	.	transcript_id "STRG.8831.1"; gene_id "STRG.8831"; exon_number "3";
+2	StringTie	exon	120127592	120127689	.	-	.	transcript_id "STRG.8831.1"; gene_id "STRG.8831"; exon_number "4";
+2	StringTie	exon	120136899	120137075	.	-	.	transcript_id "STRG.8831.1"; gene_id "STRG.8831"; exon_number "5";
+2	StringTie	exon	120154240	120154606	.	-	.	transcript_id "STRG.8831.1"; gene_id "STRG.8831"; exon_number "6";
+2	StringTie	transcript	121194838	121221232	.	-	.	transcript_id "STRG.8881.3"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; cmp_ref "ENSMUST00000110648"; class_code "j"; tss_id "TSS16904";
+2	StringTie	exon	121194838	121198607	.	-	.	transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "1";
+2	StringTie	exon	121198976	121199121	.	-	.	transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "2";
+2	StringTie	exon	121199607	121199806	.	-	.	transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "3";
+2	StringTie	exon	121200303	121200397	.	-	.	transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "4";
+2	StringTie	exon	121202543	121204548	.	-	.	transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "5";
+2	StringTie	exon	121204920	121205111	.	-	.	transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "6";
+2	StringTie	exon	121207699	121208129	.	-	.	transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "7";
+2	StringTie	exon	121208355	121208504	.	-	.	transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "8";
+2	StringTie	exon	121209081	121209352	.	-	.	transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "9";
+2	StringTie	exon	121211270	121211422	.	-	.	transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "10";
+2	StringTie	exon	121215667	121216171	.	-	.	transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "11";
+2	StringTie	exon	121221158	121221232	.	-	.	transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "12";
+2	StringTie	transcript	121199639	121204981	.	-	.	transcript_id "STRG.8881.7"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000147554"; class_code "="; tss_id "TSS16905";
+2	StringTie	exon	121199639	121199806	.	-	.	transcript_id "STRG.8881.7"; gene_id "STRG.8881"; exon_number "1";
+2	StringTie	exon	121200303	121200397	.	-	.	transcript_id "STRG.8881.7"; gene_id "STRG.8881"; exon_number "2";
+2	StringTie	exon	121202543	121202752	.	-	.	transcript_id "STRG.8881.7"; gene_id "STRG.8881"; exon_number "3";
+2	StringTie	exon	121204333	121204548	.	-	.	transcript_id "STRG.8881.7"; gene_id "STRG.8881"; exon_number "4";
+2	StringTie	exon	121204920	121204981	.	-	.	transcript_id "STRG.8881.7"; gene_id "STRG.8881"; exon_number "5";
+2	StringTie	transcript	121199639	121221232	.	-	.	transcript_id "STRG.8881.4"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; cmp_ref "ENSMUST00000110648"; class_code "c"; tss_id "TSS16904";
+2	StringTie	exon	121199639	121199806	.	-	.	transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "1";
+2	StringTie	exon	121200303	121200397	.	-	.	transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "2";
+2	StringTie	exon	121202543	121202758	.	-	.	transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "3";
+2	StringTie	exon	121204333	121204548	.	-	.	transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "4";
+2	StringTie	exon	121204920	121205111	.	-	.	transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "5";
+2	StringTie	exon	121207699	121208129	.	-	.	transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "6";
+2	StringTie	exon	121208355	121208504	.	-	.	transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "7";
+2	StringTie	exon	121209081	121209352	.	-	.	transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "8";
+2	StringTie	exon	121211270	121211422	.	-	.	transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "9";
+2	StringTie	exon	121215667	121216171	.	-	.	transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "10";
+2	StringTie	exon	121221158	121221232	.	-	.	transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "11";
+2	StringTie	transcript	121205081	121208574	.	-	.	transcript_id "STRG.8881.11"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000132812"; class_code "="; tss_id "TSS16906";
+2	StringTie	exon	121205081	121205111	.	-	.	transcript_id "STRG.8881.11"; gene_id "STRG.8881"; exon_number "1";
+2	StringTie	exon	121207699	121208129	.	-	.	transcript_id "STRG.8881.11"; gene_id "STRG.8881"; exon_number "2";
+2	StringTie	exon	121208355	121208574	.	-	.	transcript_id "STRG.8881.11"; gene_id "STRG.8881"; exon_number "3";
+2	StringTie	transcript	121208845	121221232	.	-	.	transcript_id "STRG.8881.9"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000124411"; class_code "="; tss_id "TSS16904";
+2	StringTie	exon	121208845	121209352	.	-	.	transcript_id "STRG.8881.9"; gene_id "STRG.8881"; exon_number "1";
+2	StringTie	exon	121211270	121211422	.	-	.	transcript_id "STRG.8881.9"; gene_id "STRG.8881"; exon_number "2";
+2	StringTie	exon	121215667	121216171	.	-	.	transcript_id "STRG.8881.9"; gene_id "STRG.8881"; exon_number "3";
+2	StringTie	exon	121221158	121221232	.	-	.	transcript_id "STRG.8881.9"; gene_id "STRG.8881"; exon_number "4";
+2	StringTie	transcript	121215889	121221379	.	-	.	transcript_id "STRG.8881.14"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000156493"; class_code "="; tss_id "TSS16907";
+2	StringTie	exon	121215889	121216171	.	-	.	transcript_id "STRG.8881.14"; gene_id "STRG.8881"; exon_number "1";
+2	StringTie	exon	121221158	121221379	.	-	.	transcript_id "STRG.8881.14"; gene_id "STRG.8881"; exon_number "2";
+2	StringTie	transcript	121216143	121247714	.	-	.	transcript_id "STRG.8881.5"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; cmp_ref "ENSMUST00000110648"; class_code "j"; tss_id "TSS16908";
+2	StringTie	exon	121216143	121216171	.	-	.	transcript_id "STRG.8881.5"; gene_id "STRG.8881"; exon_number "1";
+2	StringTie	exon	121221158	121221250	.	-	.	transcript_id "STRG.8881.5"; gene_id "STRG.8881"; exon_number "2";
+2	StringTie	exon	121223705	121223762	.	-	.	transcript_id "STRG.8881.5"; gene_id "STRG.8881"; exon_number "3";
+2	StringTie	exon	121227645	121228707	.	-	.	transcript_id "STRG.8881.5"; gene_id "STRG.8881"; exon_number "4";
+2	StringTie	exon	121235573	121236869	.	-	.	transcript_id "STRG.8881.5"; gene_id "STRG.8881"; exon_number "5";
+2	StringTie	exon	121243894	121244096	.	-	.	transcript_id "STRG.8881.5"; gene_id "STRG.8881"; exon_number "6";
+2	StringTie	exon	121247501	121247714	.	-	.	transcript_id "STRG.8881.5"; gene_id "STRG.8881"; exon_number "7";
+2	StringTie	transcript	121216143	121270286	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; cmp_ref "ENSMUST00000110648"; class_code "c"; tss_id "TSS16909";
+2	StringTie	exon	121216143	121216171	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "1";
+2	StringTie	exon	121221158	121221250	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "2";
+2	StringTie	exon	121223705	121223762	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "3";
+2	StringTie	exon	121227645	121227848	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "4";
+2	StringTie	exon	121228588	121228707	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "5";
+2	StringTie	exon	121235573	121236869	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "6";
+2	StringTie	exon	121243894	121244096	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "7";
+2	StringTie	exon	121247501	121247595	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "8";
+2	StringTie	exon	121248164	121248290	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "9";
+2	StringTie	exon	121251868	121252034	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "10";
+2	StringTie	exon	121253602	121253731	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "11";
+2	StringTie	exon	121256522	121256680	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "12";
+2	StringTie	exon	121259144	121259268	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "13";
+2	StringTie	exon	121269904	121269988	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "14";
+2	StringTie	exon	121270219	121270286	.	-	.	transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "15";
+2	StringTie	transcript	121216143	121271321	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000131245"; class_code "="; tss_id "TSS16910"; p_id "P8932";
+2	StringTie	exon	121216143	121216171	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "1";
+2	StringTie	exon	121221158	121221250	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "2";
+2	StringTie	exon	121223705	121223762	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "3";
+2	StringTie	exon	121227645	121227848	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "4";
+2	StringTie	exon	121235573	121236869	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "5";
+2	StringTie	exon	121243894	121244096	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "6";
+2	StringTie	exon	121247501	121247595	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "7";
+2	StringTie	exon	121248164	121248290	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "8";
+2	StringTie	exon	121251868	121252034	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "9";
+2	StringTie	exon	121253602	121253731	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "10";
+2	StringTie	exon	121256522	121256680	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "11";
+2	StringTie	exon	121259144	121259268	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "12";
+2	StringTie	exon	121269904	121269988	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "13";
+2	StringTie	exon	121270219	121270309	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "14";
+2	StringTie	exon	121270524	121270708	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "15";
+2	StringTie	exon	121271272	121271321	.	-	.	transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "16";
+2	StringTie	transcript	121228369	121235689	.	-	.	transcript_id "STRG.8881.13"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; contained_in "STRG.8881.5"; cmp_ref "ENSMUST00000142400"; class_code "="; tss_id "TSS16911"; p_id "P8931";
+2	StringTie	exon	121228369	121228707	.	-	.	transcript_id "STRG.8881.13"; gene_id "STRG.8881"; exon_number "1";
+2	StringTie	exon	121235573	121235689	.	-	.	transcript_id "STRG.8881.13"; gene_id "STRG.8881"; exon_number "2";
+2	StringTie	transcript	121256514	121271369	.	-	.	transcript_id "STRG.8881.6"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000136617"; class_code "="; tss_id "TSS16910";
+2	StringTie	exon	121256514	121256680	.	-	.	transcript_id "STRG.8881.6"; gene_id "STRG.8881"; exon_number "1";
+2	StringTie	exon	121259144	121259268	.	-	.	transcript_id "STRG.8881.6"; gene_id "STRG.8881"; exon_number "2";
+2	StringTie	exon	121269904	121269988	.	-	.	transcript_id "STRG.8881.6"; gene_id "STRG.8881"; exon_number "3";
+2	StringTie	exon	121270219	121270309	.	-	.	transcript_id "STRG.8881.6"; gene_id "STRG.8881"; exon_number "4";
+2	StringTie	exon	121270524	121270708	.	-	.	transcript_id "STRG.8881.6"; gene_id "STRG.8881"; exon_number "5";
+2	StringTie	exon	121271272	121271369	.	-	.	transcript_id "STRG.8881.6"; gene_id "STRG.8881"; exon_number "6";
+2	StringTie	transcript	121258886	121270286	.	-	.	transcript_id "STRG.8881.10"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000131426"; class_code "="; tss_id "TSS16909";
+2	StringTie	exon	121258886	121259268	.	-	.	transcript_id "STRG.8881.10"; gene_id "STRG.8881"; exon_number "1";
+2	StringTie	exon	121269904	121269988	.	-	.	transcript_id "STRG.8881.10"; gene_id "STRG.8881"; exon_number "2";
+2	StringTie	exon	121270219	121270286	.	-	.	transcript_id "STRG.8881.10"; gene_id "STRG.8881"; exon_number "3";
+2	StringTie	transcript	121267312	121271361	.	-	.	transcript_id "STRG.8881.8"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000140285"; class_code "="; tss_id "TSS16910";
+2	StringTie	exon	121267312	121269988	.	-	.	transcript_id "STRG.8881.8"; gene_id "STRG.8881"; exon_number "1";
+2	StringTie	exon	121270219	121270309	.	-	.	transcript_id "STRG.8881.8"; gene_id "STRG.8881"; exon_number "2";
+2	StringTie	exon	121270524	121270708	.	-	.	transcript_id "STRG.8881.8"; gene_id "STRG.8881"; exon_number "3";
+2	StringTie	exon	121271272	121271361	.	-	.	transcript_id "STRG.8881.8"; gene_id "STRG.8881"; exon_number "4";
+2	StringTie	transcript	121269630	121271370	.	-	.	transcript_id "STRG.8881.12"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000124060"; class_code "="; tss_id "TSS16910";
+2	StringTie	exon	121269630	121269988	.	-	.	transcript_id "STRG.8881.12"; gene_id "STRG.8881"; exon_number "1";
+2	StringTie	exon	121270524	121270708	.	-	.	transcript_id "STRG.8881.12"; gene_id "STRG.8881"; exon_number "2";
+2	StringTie	exon	121271272	121271370	.	-	.	transcript_id "STRG.8881.12"; gene_id "STRG.8881"; exon_number "3";
+3	StringTie	transcript	57736062	57835231	.	+	.	transcript_id "STRG.12098.3"; gene_id "STRG.12098"; gene_name "Rnf13"; xloc "XLOC_007425"; ref_gene_id "ENSMUSG00000036503"; cmp_ref "ENSMUST00000041826"; class_code "="; tss_id "TSS17634"; p_id "P9318";
+3	StringTie	exon	57736062	57736200	.	+	.	transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "1";
+3	StringTie	exon	57764257	57764382	.	+	.	transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "2";
+3	StringTie	exon	57769040	57769120	.	+	.	transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "3";
+3	StringTie	exon	57779383	57779508	.	+	.	transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "4";
+3	StringTie	exon	57796198	57796285	.	+	.	transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "5";
+3	StringTie	exon	57802447	57802537	.	+	.	transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "6";
+3	StringTie	exon	57807022	57807127	.	+	.	transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "7";
+3	StringTie	exon	57820507	57820600	.	+	.	transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "8";
+3	StringTie	exon	57832964	57833044	.	+	.	transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "9";
+3	StringTie	exon	57833486	57835231	.	+	.	transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "10";
+3	StringTie	transcript	57736082	57833888	.	+	.	transcript_id "STRG.12098.6"; gene_id "STRG.12098"; gene_name "Rnf13"; xloc "XLOC_007425"; ref_gene_id "ENSMUSG00000036503"; cmp_ref "ENSMUST00000197920"; class_code "="; tss_id "TSS17634";
+3	StringTie	exon	57736082	57736200	.	+	.	transcript_id "STRG.12098.6"; gene_id "STRG.12098"; exon_number "1";
+3	StringTie	exon	57833573	57833888	.	+	.	transcript_id "STRG.12098.6"; gene_id "STRG.12098"; exon_number "2";
+3	StringTie	transcript	57736082	57835233	.	+	.	transcript_id "STRG.12098.2"; gene_id "STRG.12098"; gene_name "Rnf13"; xloc "XLOC_007425"; ref_gene_id "ENSMUSG00000036503"; cmp_ref "ENSMUST00000200497"; class_code "="; tss_id "TSS17634"; p_id "P9319";
+3	StringTie	exon	57736082	57736200	.	+	.	transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "1";
+3	StringTie	exon	57764257	57764382	.	+	.	transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "2";
+3	StringTie	exon	57769040	57769120	.	+	.	transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "3";
+3	StringTie	exon	57779383	57779508	.	+	.	transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "4";
+3	StringTie	exon	57796198	57796285	.	+	.	transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "5";
+3	StringTie	exon	57802447	57802537	.	+	.	transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "6";
+3	StringTie	exon	57807022	57807127	.	+	.	transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "7";
+3	StringTie	exon	57820507	57820600	.	+	.	transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "8";
+3	StringTie	exon	57832964	57833044	.	+	.	transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "9";
+3	StringTie	exon	57833573	57835233	.	+	.	transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "10";
+3	StringTie	transcript	57736113	57835119	.	+	.	transcript_id "STRG.12098.1"; gene_id "STRG.12098"; gene_name "Rnf13"; xloc "XLOC_007425"; ref_gene_id "ENSMUSG00000036503"; cmp_ref "ENSMUST00000197205"; class_code "="; tss_id "TSS17634"; p_id "P9321";
+3	StringTie	exon	57736113	57736200	.	+	.	transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "1";
+3	StringTie	exon	57764257	57764382	.	+	.	transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "2";
+3	StringTie	exon	57769040	57769120	.	+	.	transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "3";
+3	StringTie	exon	57779383	57779508	.	+	.	transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "4";
+3	StringTie	exon	57796198	57796285	.	+	.	transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "5";
+3	StringTie	exon	57801718	57802537	.	+	.	transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "6";
+3	StringTie	exon	57807022	57807127	.	+	.	transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "7";
+3	StringTie	exon	57820507	57820600	.	+	.	transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "8";
+3	StringTie	exon	57832964	57833044	.	+	.	transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "9";
+3	StringTie	exon	57833486	57835119	.	+	.	transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "10";
+3	StringTie	transcript	57736120	57820993	.	+	.	transcript_id "STRG.12098.5"; gene_id "STRG.12098"; gene_name "Rnf13"; xloc "XLOC_007425"; cmp_ref "ENSMUST00000197205"; class_code "j"; tss_id "TSS17634";
+3	StringTie	exon	57736120	57736200	.	+	.	transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "1";
+3	StringTie	exon	57747891	57748034	.	+	.	transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "2";
+3	StringTie	exon	57764257	57764382	.	+	.	transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "3";
+3	StringTie	exon	57769040	57769120	.	+	.	transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "4";
+3	StringTie	exon	57779383	57779508	.	+	.	transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "5";
+3	StringTie	exon	57796198	57796285	.	+	.	transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "6";
+3	StringTie	exon	57802447	57802537	.	+	.	transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "7";
+3	StringTie	exon	57807022	57807127	.	+	.	transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "8";
+3	StringTie	exon	57820507	57820993	.	+	.	transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "9";
+3	StringTie	transcript	57736120	57833232	.	+	.	transcript_id "STRG.12098.4"; gene_id "STRG.12098"; gene_name "Rnf13"; xloc "XLOC_007425"; ref_gene_id "ENSMUSG00000036503"; cmp_ref "ENSMUST00000199041"; class_code "="; tss_id "TSS17634"; p_id "P9320";
+3	StringTie	exon	57736120	57736200	.	+	.	transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "1";
+3	StringTie	exon	57764257	57764382	.	+	.	transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "2";
+3	StringTie	exon	57769040	57769120	.	+	.	transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "3";
+3	StringTie	exon	57779383	57779508	.	+	.	transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "4";
+3	StringTie	exon	57796198	57796285	.	+	.	transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "5";
+3	StringTie	exon	57802447	57802537	.	+	.	transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "6";
+3	StringTie	exon	57807022	57807127	.	+	.	transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "7";
+3	StringTie	exon	57820507	57820600	.	+	.	transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "8";
+3	StringTie	exon	57832964	57833232	.	+	.	transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "9";
+3	StringTie	transcript	57644349	57651715	.	-	.	transcript_id "STRG.12092.1"; gene_id "STRG.12092"; gene_name "Commd2"; xloc "XLOC_007733"; ref_gene_id "ENSMUSG00000036513"; cmp_ref "ENSMUST00000160959"; class_code "="; tss_id "TSS18453"; p_id "P9796";
+3	StringTie	exon	57644349	57646876	.	-	.	transcript_id "STRG.12092.1"; gene_id "STRG.12092"; exon_number "1";
+3	StringTie	exon	57650042	57650215	.	-	.	transcript_id "STRG.12092.1"; gene_id "STRG.12092"; exon_number "2";
+3	StringTie	exon	57650691	57650773	.	-	.	transcript_id "STRG.12092.1"; gene_id "STRG.12092"; exon_number "3";
+3	StringTie	exon	57651422	57651499	.	-	.	transcript_id "STRG.12092.1"; gene_id "STRG.12092"; exon_number "4";
+3	StringTie	exon	57651587	57651715	.	-	.	transcript_id "STRG.12092.1"; gene_id "STRG.12092"; exon_number "5";
+3	StringTie	transcript	57651102	57651715	.	-	.	transcript_id "STRG.12092.2"; gene_id "STRG.12092"; gene_name "Commd2"; xloc "XLOC_007733"; ref_gene_id "ENSMUSG00000036513"; cmp_ref "ENSMUST00000163087"; class_code "="; tss_id "TSS18453";
+3	StringTie	exon	57651102	57651499	.	-	.	transcript_id "STRG.12092.2"; gene_id "STRG.12092"; exon_number "1";
+3	StringTie	exon	57651587	57651715	.	-	.	transcript_id "STRG.12092.2"; gene_id "STRG.12092"; exon_number "2";
+5	StringTie	transcript	110839983	110874133	.	+	.	transcript_id "STRG.22906.2"; gene_id "STRG.22906"; gene_name "Chek2"; xloc "XLOC_009008"; ref_gene_id "ENSMUSG00000029521"; cmp_ref "ENSMUST00000199937"; class_code "="; tss_id "TSS21738"; p_id "P11495";
+5	StringTie	exon	110839983	110840048	.	+	.	transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "1";
+5	StringTie	exon	110841206	110841543	.	+	.	transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "2";
+5	StringTie	exon	110848389	110848513	.	+	.	transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "3";
+5	StringTie	exon	110848630	110848777	.	+	.	transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "4";
+5	StringTie	exon	110855725	110855833	.	+	.	transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "5";
+5	StringTie	exon	110858374	110858427	.	+	.	transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "6";
+5	StringTie	exon	110860863	110860924	.	+	.	transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "7";
+5	StringTie	exon	110863258	110863357	.	+	.	transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "8";
+5	StringTie	exon	110865522	110865608	.	+	.	transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "9";
+5	StringTie	exon	110866263	110866426	.	+	.	transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "10";
+5	StringTie	exon	110866938	110867053	.	+	.	transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "11";
+5	StringTie	exon	110868008	110868093	.	+	.	transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "12";
+5	StringTie	exon	110872027	110872107	.	+	.	transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "13";
+5	StringTie	exon	110873480	110874133	.	+	.	transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "14";
+5	StringTie	transcript	110840000	110874145	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; gene_name "Chek2"; xloc "XLOC_009008"; ref_gene_id "ENSMUSG00000029521"; cmp_ref "ENSMUST00000066160"; class_code "="; tss_id "TSS21738"; p_id "P11494";
+5	StringTie	exon	110840000	110840048	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "1";
+5	StringTie	exon	110841206	110841543	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "2";
+5	StringTie	exon	110848389	110848513	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "3";
+5	StringTie	exon	110848630	110848777	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "4";
+5	StringTie	exon	110849596	110849686	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "5";
+5	StringTie	exon	110855725	110855833	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "6";
+5	StringTie	exon	110858374	110858427	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "7";
+5	StringTie	exon	110860863	110860924	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "8";
+5	StringTie	exon	110863258	110863357	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "9";
+5	StringTie	exon	110865522	110865608	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "10";
+5	StringTie	exon	110866263	110866426	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "11";
+5	StringTie	exon	110866938	110867053	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "12";
+5	StringTie	exon	110868008	110868093	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "13";
+5	StringTie	exon	110872027	110872107	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "14";
+5	StringTie	exon	110873480	110874145	.	+	.	transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "15";
+5	StringTie	transcript	110840254	110874013	.	+	.	transcript_id "STRG.22906.3"; gene_id "STRG.22906"; gene_name "Chek2"; xloc "XLOC_009008"; cmp_ref "ENSMUST00000066160"; class_code "j"; tss_id "TSS21739";
+5	StringTie	exon	110840254	110841543	.	+	.	transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "1";
+5	StringTie	exon	110848389	110848513	.	+	.	transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "2";
+5	StringTie	exon	110848630	110848777	.	+	.	transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "3";
+5	StringTie	exon	110849596	110849686	.	+	.	transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "4";
+5	StringTie	exon	110855725	110855833	.	+	.	transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "5";
+5	StringTie	exon	110858374	110858427	.	+	.	transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "6";
+5	StringTie	exon	110860863	110860924	.	+	.	transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "7";
+5	StringTie	exon	110863258	110863357	.	+	.	transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "8";
+5	StringTie	exon	110865522	110865608	.	+	.	transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "9";
+5	StringTie	exon	110866263	110866426	.	+	.	transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "10";
+5	StringTie	exon	110866938	110867053	.	+	.	transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "11";
+5	StringTie	exon	110868008	110868093	.	+	.	transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "12";
+5	StringTie	exon	110872027	110874013	.	+	.	transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "13";
+5	StringTie	transcript	110855690	110868215	.	+	.	transcript_id "STRG.22906.4"; gene_id "STRG.22906"; gene_name "Chek2"; xloc "XLOC_009008"; cmp_ref "ENSMUST00000066160"; class_code "j"; tss_id "TSS21740";
+5	StringTie	exon	110855690	110855833	.	+	.	transcript_id "STRG.22906.4"; gene_id "STRG.22906"; exon_number "1";
+5	StringTie	exon	110858374	110858427	.	+	.	transcript_id "STRG.22906.4"; gene_id "STRG.22906"; exon_number "2";
+5	StringTie	exon	110860863	110860924	.	+	.	transcript_id "STRG.22906.4"; gene_id "STRG.22906"; exon_number "3";
+5	StringTie	exon	110863258	110863357	.	+	.	transcript_id "STRG.22906.4"; gene_id "STRG.22906"; exon_number "4";
+5	StringTie	exon	110865522	110865608	.	+	.	transcript_id "STRG.22906.4"; gene_id "STRG.22906"; exon_number "5";
+5	StringTie	exon	110868008	110868215	.	+	.	transcript_id "STRG.22906.4"; gene_id "STRG.22906"; exon_number "6";
+5	StringTie	transcript	110866271	110866720	.	+	.	transcript_id "STRG.22906.5"; gene_id "STRG.22906"; gene_name "Chek2"; xloc "XLOC_009008"; ref_gene_id "ENSMUSG00000029521"; cmp_ref "ENSMUST00000196650"; class_code "="; tss_id "TSS21741";
+5	StringTie	exon	110866271	110866426	.	+	.	transcript_id "STRG.22906.5"; gene_id "STRG.22906"; exon_number "1";
+5	StringTie	exon	110866536	110866720	.	+	.	transcript_id "STRG.22906.5"; gene_id "STRG.22906"; exon_number "2";
+5	StringTie	transcript	110892839	111085034	.	+	.	transcript_id "STRG.22909.1"; gene_id "STRG.22909"; gene_name "Ttc28"; xloc "XLOC_009009"; cmp_ref "ENSMUST00000040111"; class_code "c"; tss_id "TSS21742";
+5	StringTie	exon	110892839	110893110	.	+	.	transcript_id "STRG.22909.1"; gene_id "STRG.22909"; exon_number "1";
+5	StringTie	exon	111085022	111085034	.	+	.	transcript_id "STRG.22909.1"; gene_id "STRG.22909"; exon_number "2";
+5	StringTie	transcript	111100698	111102068	.	+	.	transcript_id "STRG.22913.1"; gene_id "STRG.22913"; gene_name "Ttc28"; xloc "XLOC_009009"; cmp_ref "ENSMUST00000040111"; class_code "c"; tss_id "TSS21743";
+5	StringTie	exon	111100698	111100966	.	+	.	transcript_id "STRG.22913.1"; gene_id "STRG.22913"; exon_number "1";
+5	StringTie	exon	111101970	111102068	.	+	.	transcript_id "STRG.22913.1"; gene_id "STRG.22913"; exon_number "2";
+5	StringTie	transcript	111225458	111229415	.	+	.	transcript_id "STRG.22916.1"; gene_id "STRG.22916"; gene_name "Ttc28"; xloc "XLOC_009009"; ref_gene_id "ENSMUSG00000033209"; cmp_ref "ENSMUST00000125470"; class_code "="; tss_id "TSS21744";
+5	StringTie	exon	111225458	111226081	.	+	.	transcript_id "STRG.22916.1"; gene_id "STRG.22916"; exon_number "1";
+5	StringTie	exon	111229348	111229415	.	+	.	transcript_id "STRG.22916.1"; gene_id "STRG.22916"; exon_number "2";
+5	StringTie	transcript	111231101	111235600	.	+	.	transcript_id "STRG.22917.1"; gene_id "STRG.22917"; gene_name "Ttc28"; xloc "XLOC_009009"; cmp_ref "ENSMUST00000040111"; class_code "c"; tss_id "TSS21745";
+5	StringTie	exon	111231101	111231179	.	+	.	transcript_id "STRG.22917.1"; gene_id "STRG.22917"; exon_number "1";
+5	StringTie	exon	111233246	111233464	.	+	.	transcript_id "STRG.22917.1"; gene_id "STRG.22917"; exon_number "2";
+5	StringTie	exon	111235476	111235600	.	+	.	transcript_id "STRG.22917.1"; gene_id "STRG.22917"; exon_number "3";
+5	StringTie	transcript	111330763	111388359	.	+	.	transcript_id "STRG.22924.1"; gene_id "STRG.22924"; gene_name "Pitpnb"; xloc "XLOC_009010"; ref_gene_id "ENSMUSG00000050017"; cmp_ref "ENSMUST00000086635"; class_code "="; tss_id "TSS21746"; p_id "P11496";
+5	StringTie	exon	111330763	111330833	.	+	.	transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "1";
+5	StringTie	exon	111335495	111335525	.	+	.	transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "2";
+5	StringTie	exon	111338283	111338428	.	+	.	transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "3";
+5	StringTie	exon	111346483	111346574	.	+	.	transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "4";
+5	StringTie	exon	111347120	111347127	.	+	.	transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "5";
+5	StringTie	exon	111347781	111347855	.	+	.	transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "6";
+5	StringTie	exon	111349491	111349574	.	+	.	transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "7";
+5	StringTie	exon	111371312	111371389	.	+	.	transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "8";
+5	StringTie	exon	111380192	111380302	.	+	.	transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "9";
+5	StringTie	exon	111382988	111383110	.	+	.	transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "10";
+5	StringTie	exon	111385520	111385604	.	+	.	transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "11";
+5	StringTie	exon	111386503	111388359	.	+	.	transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "12";
+5	StringTie	transcript	111330807	111388359	.	+	.	transcript_id "STRG.22924.2"; gene_id "STRG.22924"; gene_name "Pitpnb"; xloc "XLOC_009010"; ref_gene_id "ENSMUSG00000050017"; cmp_ref "ENSMUST00000200298"; class_code "="; tss_id "TSS21746"; p_id "P11497";
+5	StringTie	exon	111330807	111330833	.	+	.	transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "1";
+5	StringTie	exon	111335495	111335525	.	+	.	transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "2";
+5	StringTie	exon	111338283	111338428	.	+	.	transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "3";
+5	StringTie	exon	111346483	111346574	.	+	.	transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "4";
+5	StringTie	exon	111347120	111347127	.	+	.	transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "5";
+5	StringTie	exon	111347781	111347855	.	+	.	transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "6";
+5	StringTie	exon	111349491	111349574	.	+	.	transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "7";
+5	StringTie	exon	111371312	111371389	.	+	.	transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "8";
+5	StringTie	exon	111380192	111380302	.	+	.	transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "9";
+5	StringTie	exon	111382988	111383110	.	+	.	transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "10";
+5	StringTie	exon	111386503	111388359	.	+	.	transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "11";
+5	StringTie	transcript	111380169	111383703	.	+	.	transcript_id "STRG.22924.3"; gene_id "STRG.22924"; gene_name "Pitpnb"; xloc "XLOC_009010"; ref_gene_id "ENSMUSG00000050017"; cmp_ref "ENSMUST00000198137"; class_code "="; tss_id "TSS21747";
+5	StringTie	exon	111380169	111380302	.	+	.	transcript_id "STRG.22924.3"; gene_id "STRG.22924"; exon_number "1";
+5	StringTie	exon	111382988	111383703	.	+	.	transcript_id "STRG.22924.3"; gene_id "STRG.22924"; exon_number "2";
+5	StringTie	transcript	111417442	111454864	.	+	.	transcript_id "STRG.22929.1"; gene_id "STRG.22929"; gene_name "Mn1"; xloc "XLOC_009011"; cmp_ref "ENSMUST00000094463"; class_code "j"; tss_id "TSS21748";
+5	StringTie	exon	111417442	111417761	.	+	.	transcript_id "STRG.22929.1"; gene_id "STRG.22929"; exon_number "1";
+5	StringTie	exon	111419610	111421883	.	+	.	transcript_id "STRG.22929.1"; gene_id "STRG.22929"; exon_number "2";
+5	StringTie	exon	111454616	111454864	.	+	.	transcript_id "STRG.22929.1"; gene_id "STRG.22929"; exon_number "3";
+5	StringTie	transcript	111417442	111457033	.	+	.	transcript_id "STRG.22929.2"; gene_id "STRG.22929"; gene_name "Mn1"; xloc "XLOC_009011"; ref_gene_id "ENSMUSG00000070576"; cmp_ref "ENSMUST00000094463"; class_code "="; tss_id "TSS21748"; p_id "P11498";
+5	StringTie	exon	111417442	111421883	.	+	.	transcript_id "STRG.22929.2"; gene_id "STRG.22929"; exon_number "1";
+5	StringTie	exon	111454616	111457033	.	+	.	transcript_id "STRG.22929.2"; gene_id "STRG.22929"; exon_number "2";
+5	StringTie	transcript	111546621	111566751	.	+	.	transcript_id "STRG.22958.1"; gene_id "STRG.22958"; xloc "XLOC_009012"; class_code "u"; tss_id "TSS21749";
+5	StringTie	exon	111546621	111546787	.	+	.	transcript_id "STRG.22958.1"; gene_id "STRG.22958"; exon_number "1";
+5	StringTie	exon	111553852	111553928	.	+	.	transcript_id "STRG.22958.1"; gene_id "STRG.22958"; exon_number "2";
+5	StringTie	exon	111562387	111564386	.	+	.	transcript_id "STRG.22958.1"; gene_id "STRG.22958"; exon_number "3";
+5	StringTie	exon	111565966	111566751	.	+	.	transcript_id "STRG.22958.1"; gene_id "STRG.22958"; exon_number "4";
+5	StringTie	transcript	111553370	111564411	.	+	.	transcript_id "STRG.22958.2"; gene_id "STRG.22958"; xloc "XLOC_009012"; class_code "u"; tss_id "TSS21750";
+5	StringTie	exon	111553370	111553928	.	+	.	transcript_id "STRG.22958.2"; gene_id "STRG.22958"; exon_number "1";
+5	StringTie	exon	111562387	111563609	.	+	.	transcript_id "STRG.22958.2"; gene_id "STRG.22958"; exon_number "2";
+5	StringTie	exon	111564163	111564411	.	+	.	transcript_id "STRG.22958.2"; gene_id "STRG.22958"; exon_number "3";
+5	StringTie	transcript	111553370	111567041	.	+	.	transcript_id "STRG.22958.3"; gene_id "STRG.22958"; xloc "XLOC_009012"; class_code "u"; tss_id "TSS21750";
+5	StringTie	exon	111553370	111553928	.	+	.	transcript_id "STRG.22958.3"; gene_id "STRG.22958"; exon_number "1";
+5	StringTie	exon	111562387	111564386	.	+	.	transcript_id "STRG.22958.3"; gene_id "STRG.22958"; exon_number "2";
+5	StringTie	exon	111565037	111567041	.	+	.	transcript_id "STRG.22958.3"; gene_id "STRG.22958"; exon_number "3";
+5	StringTie	transcript	111581568	111582873	.	+	.	transcript_id "STRG.22963.1"; gene_id "STRG.22963"; gene_name "C130026L21Rik"; xloc "XLOC_009013"; ref_gene_id "ENSMUSG00000052848"; cmp_ref "ENSMUST00000196725"; class_code "="; tss_id "TSS21751";
+5	StringTie	exon	111581568	111581870	.	+	.	transcript_id "STRG.22963.1"; gene_id "STRG.22963"; exon_number "1";
+5	StringTie	exon	111582421	111582873	.	+	.	transcript_id "STRG.22963.1"; gene_id "STRG.22963"; exon_number "2";
+5	StringTie	transcript	112276691	112315361	.	+	.	transcript_id "STRG.22971.1"; gene_id "STRG.22971"; gene_name "Tpst2"; xloc "XLOC_009014"; ref_gene_id "ENSMUSG00000029344"; cmp_ref "ENSMUST00000031287"; class_code "="; tss_id "TSS21752"; p_id "P11499";
+5	StringTie	exon	112276691	112276771	.	+	.	transcript_id "STRG.22971.1"; gene_id "STRG.22971"; exon_number "1";
+5	StringTie	exon	112303900	112303971	.	+	.	transcript_id "STRG.22971.1"; gene_id "STRG.22971"; exon_number "2";
+5	StringTie	exon	112307566	112308477	.	+	.	transcript_id "STRG.22971.1"; gene_id "STRG.22971"; exon_number "3";
+5	StringTie	exon	112309689	112309887	.	+	.	transcript_id "STRG.22971.1"; gene_id "STRG.22971"; exon_number "4";
+5	StringTie	exon	112311684	112311734	.	+	.	transcript_id "STRG.22971.1"; gene_id "STRG.22971"; exon_number "5";
+5	StringTie	exon	112313242	112313290	.	+	.	transcript_id "STRG.22971.1"; gene_id "STRG.22971"; exon_number "6";
+5	StringTie	exon	112314891	112315361	.	+	.	transcript_id "STRG.22971.1"; gene_id "STRG.22971"; exon_number "7";
+5	StringTie	transcript	112276704	112309032	.	+	.	transcript_id "STRG.22971.3"; gene_id "STRG.22971"; gene_name "Tpst2"; xloc "XLOC_009014"; ref_gene_id "ENSMUSG00000029344"; cmp_ref "ENSMUST00000134071"; class_code "="; tss_id "TSS21752";
+5	StringTie	exon	112276704	112276771	.	+	.	transcript_id "STRG.22971.3"; gene_id "STRG.22971"; exon_number "1";
+5	StringTie	exon	112303900	112303971	.	+	.	transcript_id "STRG.22971.3"; gene_id "STRG.22971"; exon_number "2";
+5	StringTie	exon	112307566	112309032	.	+	.	transcript_id "STRG.22971.3"; gene_id "STRG.22971"; exon_number "3";
+5	StringTie	transcript	112276707	112315355	.	+	.	transcript_id "STRG.22971.2"; gene_id "STRG.22971"; gene_name "Tpst2"; xloc "XLOC_009014"; ref_gene_id "ENSMUSG00000029344"; cmp_ref "ENSMUST00000071455"; class_code "="; tss_id "TSS21752"; p_id "P11499";
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+5	StringTie	exon	112307566	112308477	.	+	.	transcript_id "STRG.22971.2"; gene_id "STRG.22971"; exon_number "2";
+5	StringTie	exon	112309689	112309887	.	+	.	transcript_id "STRG.22971.2"; gene_id "STRG.22971"; exon_number "3";
+5	StringTie	exon	112311684	112311734	.	+	.	transcript_id "STRG.22971.2"; gene_id "STRG.22971"; exon_number "4";
+5	StringTie	exon	112313242	112313290	.	+	.	transcript_id "STRG.22971.2"; gene_id "STRG.22971"; exon_number "5";
+5	StringTie	exon	112314891	112315355	.	+	.	transcript_id "STRG.22971.2"; gene_id "STRG.22971"; exon_number "6";
+5	StringTie	transcript	112308291	112309812	.	+	.	transcript_id "STRG.22971.5"; gene_id "STRG.22971"; gene_name "Tpst2"; xloc "XLOC_009014"; ref_gene_id "ENSMUSG00000029344"; cmp_ref "ENSMUST00000140262"; class_code "="; tss_id "TSS21753"; p_id "P11500";
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+5	StringTie	exon	112309689	112309812	.	+	.	transcript_id "STRG.22971.5"; gene_id "STRG.22971"; exon_number "2";
+5	StringTie	transcript	112312894	112314964	.	+	.	transcript_id "STRG.22971.4"; gene_id "STRG.22971"; gene_name "Tpst2"; xloc "XLOC_009014"; ref_gene_id "ENSMUSG00000029344"; cmp_ref "ENSMUST00000139482"; class_code "="; tss_id "TSS21754";
+5	StringTie	exon	112312894	112313290	.	+	.	transcript_id "STRG.22971.4"; gene_id "STRG.22971"; exon_number "1";
+5	StringTie	exon	112314891	112314964	.	+	.	transcript_id "STRG.22971.4"; gene_id "STRG.22971"; exon_number "2";
+5	StringTie	transcript	112326358	112338073	.	+	.	transcript_id "STRG.22973.1"; gene_id "STRG.22973"; gene_name "Tfip11"; xloc "XLOC_009015"; ref_gene_id "ENSMUSG00000029345"; cmp_ref "ENSMUST00000031288"; class_code "="; tss_id "TSS21755"; p_id "P11501";
+5	StringTie	exon	112326358	112326473	.	+	.	transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "1";
+5	StringTie	exon	112327485	112327670	.	+	.	transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "2";
+5	StringTie	exon	112327962	112328182	.	+	.	transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "3";
+5	StringTie	exon	112329366	112329519	.	+	.	transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "4";
+5	StringTie	exon	112329747	112329903	.	+	.	transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "5";
+5	StringTie	exon	112331091	112331218	.	+	.	transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "6";
+5	StringTie	exon	112331868	112332020	.	+	.	transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "7";
+5	StringTie	exon	112332964	112333491	.	+	.	transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "8";
+5	StringTie	exon	112333575	112333681	.	+	.	transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "9";
+5	StringTie	exon	112334317	112334485	.	+	.	transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "10";
+5	StringTie	exon	112334860	112335103	.	+	.	transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "11";
+5	StringTie	exon	112335573	112335715	.	+	.	transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "12";
+5	StringTie	exon	112336015	112336180	.	+	.	transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "13";
+5	StringTie	exon	112336986	112338073	.	+	.	transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "14";
+5	StringTie	transcript	112335642	112337273	.	+	.	transcript_id "STRG.22973.2"; gene_id "STRG.22973"; gene_name "Tfip11"; xloc "XLOC_009015"; ref_gene_id "ENSMUSG00000029345"; cmp_ref "ENSMUST00000126736"; class_code "="; tss_id "TSS21756";
+5	StringTie	exon	112335642	112336180	.	+	.	transcript_id "STRG.22973.2"; gene_id "STRG.22973"; exon_number "1";
+5	StringTie	exon	112336986	112337273	.	+	.	transcript_id "STRG.22973.2"; gene_id "STRG.22973"; exon_number "2";
+5	StringTie	transcript	112343083	112378414	.	+	.	transcript_id "STRG.22978.2"; gene_id "STRG.22978"; gene_name "Hps4"; xloc "XLOC_009016"; ref_gene_id "ENSMUSG00000042328"; cmp_ref "ENSMUST00000112359"; class_code "="; tss_id "TSS21757"; p_id "P11502";
+5	StringTie	exon	112343083	112343163	.	+	.	transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "1";
+5	StringTie	exon	112344044	112345048	.	+	.	transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "2";
+5	StringTie	exon	112346594	112346684	.	+	.	transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "3";
+5	StringTie	exon	112349285	112349428	.	+	.	transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "4";
+5	StringTie	exon	112363109	112363216	.	+	.	transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "5";
+5	StringTie	exon	112363546	112363662	.	+	.	transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "6";
+5	StringTie	exon	112364521	112364615	.	+	.	transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "7";
+5	StringTie	exon	112366899	112366971	.	+	.	transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "8";
+5	StringTie	exon	112368936	112368972	.	+	.	transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "9";
+5	StringTie	exon	112369455	112369551	.	+	.	transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "10";
+5	StringTie	exon	112369946	112370744	.	+	.	transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "11";
+5	StringTie	exon	112374880	112375012	.	+	.	transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "12";
+5	StringTie	exon	112375353	112375461	.	+	.	transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "13";
+5	StringTie	exon	112377959	112378414	.	+	.	transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "14";
+5	StringTie	transcript	112343093	112344747	.	+	.	transcript_id "STRG.22978.3"; gene_id "STRG.22978"; gene_name "Hps4"; xloc "XLOC_009016"; ref_gene_id "ENSMUSG00000042328"; cmp_ref "ENSMUST00000176737"; class_code "="; tss_id "TSS21757";
+5	StringTie	exon	112343093	112343122	.	+	.	transcript_id "STRG.22978.3"; gene_id "STRG.22978"; exon_number "1";
+5	StringTie	exon	112344044	112344747	.	+	.	transcript_id "STRG.22978.3"; gene_id "STRG.22978"; exon_number "2";
+5	StringTie	transcript	112343095	112378414	.	+	.	transcript_id "STRG.22978.1"; gene_id "STRG.22978"; gene_name "Hps4"; xloc "XLOC_009016"; ref_gene_id "ENSMUSG00000042328"; cmp_ref "ENSMUST00000035279"; class_code "="; tss_id "TSS21757"; p_id "P11502";
+5	StringTie	exon	112343095	112343163	.	+	.	transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "1";
+5	StringTie	exon	112344541	112345048	.	+	.	transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "2";
+5	StringTie	exon	112346594	112346684	.	+	.	transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "3";
+5	StringTie	exon	112349285	112349428	.	+	.	transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "4";
+5	StringTie	exon	112363109	112363216	.	+	.	transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "5";
+5	StringTie	exon	112363546	112363662	.	+	.	transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "6";
+5	StringTie	exon	112364521	112364615	.	+	.	transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "7";
+5	StringTie	exon	112366899	112366971	.	+	.	transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "8";
+5	StringTie	exon	112368936	112368972	.	+	.	transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "9";
+5	StringTie	exon	112369455	112369551	.	+	.	transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "10";
+5	StringTie	exon	112369946	112370744	.	+	.	transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "11";
+5	StringTie	exon	112374880	112375012	.	+	.	transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "12";
+5	StringTie	exon	112375353	112375461	.	+	.	transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "13";
+5	StringTie	exon	112377959	112378414	.	+	.	transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "14";
+5	StringTie	transcript	112343099	112344747	.	+	.	transcript_id "STRG.22978.6"; gene_id "STRG.22978"; gene_name "Hps4"; xloc "XLOC_009016"; cmp_ref "ENSMUST00000133708"; class_code "c"; tss_id "TSS21757";
+5	StringTie	exon	112343099	112343122	.	+	.	transcript_id "STRG.22978.6"; gene_id "STRG.22978"; exon_number "1";
+5	StringTie	exon	112344541	112344747	.	+	.	transcript_id "STRG.22978.6"; gene_id "STRG.22978"; exon_number "2";
+5	StringTie	transcript	112368745	112369774	.	+	.	transcript_id "STRG.22978.5"; gene_id "STRG.22978"; gene_name "Hps4"; xloc "XLOC_009016"; ref_gene_id "ENSMUSG00000042328"; cmp_ref "ENSMUST00000129839"; class_code "="; tss_id "TSS21758";
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+5	StringTie	exon	112369455	112369774	.	+	.	transcript_id "STRG.22978.5"; gene_id "STRG.22978"; exon_number "2";
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+5	StringTie	exon	112377959	112378401	.	+	.	transcript_id "STRG.22978.4"; gene_id "STRG.22978"; exon_number "2";
+5	StringTie	transcript	112793300	112795691	.	+	.	transcript_id "STRG.22983.1"; gene_id "STRG.22983"; gene_name "1700095B10Rik"; xloc "XLOC_009017"; ref_gene_id "ENSMUSG00000098230"; cmp_ref "ENSMUST00000189538"; class_code "="; tss_id "TSS21760";
+5	StringTie	exon	112793300	112793611	.	+	.	transcript_id "STRG.22983.1"; gene_id "STRG.22983"; exon_number "1";
+5	StringTie	exon	112795415	112795691	.	+	.	transcript_id "STRG.22983.1"; gene_id "STRG.22983"; exon_number "2";
+5	StringTie	transcript	110784488	110810097	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; ref_gene_id "ENSMUSG00000029512"; cmp_ref "ENSMUST00000031490"; class_code "="; tss_id "TSS22921"; p_id "P12160";
+5	StringTie	exon	110784488	110786227	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "1";
+5	StringTie	exon	110786300	110786435	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "2";
+5	StringTie	exon	110787084	110787241	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "3";
+5	StringTie	exon	110787574	110787692	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "4";
+5	StringTie	exon	110787773	110787945	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "5";
+5	StringTie	exon	110788110	110788300	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "6";
+5	StringTie	exon	110788729	110788872	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "7";
+5	StringTie	exon	110788948	110789057	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "8";
+5	StringTie	exon	110789342	110789535	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "9";
+5	StringTie	exon	110790212	110790480	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "10";
+5	StringTie	exon	110790850	110790936	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "11";
+5	StringTie	exon	110791052	110791197	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "12";
+5	StringTie	exon	110791601	110791726	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "13";
+5	StringTie	exon	110792102	110792191	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "14";
+5	StringTie	exon	110792397	110792457	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "15";
+5	StringTie	exon	110792966	110793113	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "16";
+5	StringTie	exon	110793815	110793903	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "17";
+5	StringTie	exon	110794193	110794243	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "18";
+5	StringTie	exon	110794585	110794667	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "19";
+5	StringTie	exon	110794747	110794805	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "20";
+5	StringTie	exon	110795732	110795833	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "21";
+5	StringTie	exon	110796156	110796229	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "22";
+5	StringTie	exon	110796327	110796500	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "23";
+5	StringTie	exon	110798882	110798918	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "24";
+5	StringTie	exon	110799124	110799156	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "25";
+5	StringTie	exon	110809005	110809046	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "26";
+5	StringTie	exon	110809127	110809219	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "27";
+5	StringTie	exon	110809614	110810097	.	-	.	transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "28";
+5	StringTie	transcript	110786039	110787221	.	-	.	transcript_id "STRG.22901.9"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; ref_gene_id "ENSMUSG00000029512"; cmp_ref "ENSMUST00000199717"; class_code "="; tss_id "TSS22922";
+5	StringTie	exon	110786039	110786435	.	-	.	transcript_id "STRG.22901.9"; gene_id "STRG.22901"; exon_number "1";
+5	StringTie	exon	110787084	110787221	.	-	.	transcript_id "STRG.22901.9"; gene_id "STRG.22901"; exon_number "2";
+5	StringTie	transcript	110786094	110796066	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; cmp_ref "ENSMUST00000031490"; class_code "j"; tss_id "TSS22923";
+5	StringTie	exon	110786094	110786227	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "1";
+5	StringTie	exon	110786300	110786435	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "2";
+5	StringTie	exon	110787084	110787241	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "3";
+5	StringTie	exon	110787574	110787692	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "4";
+5	StringTie	exon	110787773	110787945	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "5";
+5	StringTie	exon	110788110	110788300	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "6";
+5	StringTie	exon	110788729	110788872	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "7";
+5	StringTie	exon	110788948	110789535	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "8";
+5	StringTie	exon	110790212	110790480	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "9";
+5	StringTie	exon	110790850	110790936	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "10";
+5	StringTie	exon	110791052	110791197	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "11";
+5	StringTie	exon	110791601	110791726	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "12";
+5	StringTie	exon	110792102	110792191	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "13";
+5	StringTie	exon	110792397	110792457	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "14";
+5	StringTie	exon	110792966	110793113	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "15";
+5	StringTie	exon	110793815	110793903	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "16";
+5	StringTie	exon	110794193	110794243	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "17";
+5	StringTie	exon	110794585	110794667	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "18";
+5	StringTie	exon	110794747	110794805	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "19";
+5	StringTie	exon	110795732	110796066	.	-	.	transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "20";
+5	StringTie	transcript	110786094	110810053	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; ref_gene_id "ENSMUSG00000029512"; cmp_ref "ENSMUST00000200299"; class_code "="; tss_id "TSS22921"; p_id "P12161";
+5	StringTie	exon	110786094	110786227	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "1";
+5	StringTie	exon	110786300	110786435	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "2";
+5	StringTie	exon	110787084	110787241	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "3";
+5	StringTie	exon	110787574	110787692	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "4";
+5	StringTie	exon	110787773	110787945	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "5";
+5	StringTie	exon	110788110	110788300	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "6";
+5	StringTie	exon	110788729	110788872	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "7";
+5	StringTie	exon	110788948	110789057	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "8";
+5	StringTie	exon	110789342	110789535	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "9";
+5	StringTie	exon	110790212	110790480	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "10";
+5	StringTie	exon	110790850	110790954	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "11";
+5	StringTie	exon	110791052	110791197	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "12";
+5	StringTie	exon	110791601	110791726	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "13";
+5	StringTie	exon	110792102	110792191	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "14";
+5	StringTie	exon	110792397	110792457	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "15";
+5	StringTie	exon	110792966	110793113	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "16";
+5	StringTie	exon	110793815	110793903	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "17";
+5	StringTie	exon	110794193	110794243	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "18";
+5	StringTie	exon	110794585	110794667	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "19";
+5	StringTie	exon	110794747	110794805	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "20";
+5	StringTie	exon	110795732	110795833	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "21";
+5	StringTie	exon	110796156	110796229	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "22";
+5	StringTie	exon	110796327	110796500	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "23";
+5	StringTie	exon	110798882	110798918	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "24";
+5	StringTie	exon	110799124	110799156	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "25";
+5	StringTie	exon	110809005	110809046	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "26";
+5	StringTie	exon	110809127	110809219	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "27";
+5	StringTie	exon	110809614	110810053	.	-	.	transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "28";
+5	StringTie	transcript	110787891	110788667	.	-	.	transcript_id "STRG.22901.7"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; ref_gene_id "ENSMUSG00000029512"; cmp_ref "ENSMUST00000199568"; class_code "="; tss_id "TSS22924";
+5	StringTie	exon	110787891	110787945	.	-	.	transcript_id "STRG.22901.7"; gene_id "STRG.22901"; exon_number "1";
+5	StringTie	exon	110788110	110788667	.	-	.	transcript_id "STRG.22901.7"; gene_id "STRG.22901"; exon_number "2";
+5	StringTie	transcript	110791398	110792192	.	-	.	transcript_id "STRG.22901.8"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; ref_gene_id "ENSMUSG00000029512"; cmp_ref "ENSMUST00000200099"; class_code "="; tss_id "TSS22925";
+5	StringTie	exon	110791398	110791726	.	-	.	transcript_id "STRG.22901.8"; gene_id "STRG.22901"; exon_number "1";
+5	StringTie	exon	110792102	110792192	.	-	.	transcript_id "STRG.22901.8"; gene_id "STRG.22901"; exon_number "2";
+5	StringTie	transcript	110791673	110793405	.	-	.	transcript_id "STRG.22901.6"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; ref_gene_id "ENSMUSG00000029512"; cmp_ref "ENSMUST00000196883"; class_code "="; tss_id "TSS22926";
+5	StringTie	exon	110791673	110791726	.	-	.	transcript_id "STRG.22901.6"; gene_id "STRG.22901"; exon_number "1";
+5	StringTie	exon	110792102	110792191	.	-	.	transcript_id "STRG.22901.6"; gene_id "STRG.22901"; exon_number "2";
+5	StringTie	exon	110792397	110792457	.	-	.	transcript_id "STRG.22901.6"; gene_id "STRG.22901"; exon_number "3";
+5	StringTie	exon	110792966	110793405	.	-	.	transcript_id "STRG.22901.6"; gene_id "STRG.22901"; exon_number "4";
+5	StringTie	transcript	110792545	110796066	.	-	.	transcript_id "STRG.22901.5"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; cmp_ref "ENSMUST00000031490"; class_code "j"; tss_id "TSS22923";
+5	StringTie	exon	110792545	110793113	.	-	.	transcript_id "STRG.22901.5"; gene_id "STRG.22901"; exon_number "1";
+5	StringTie	exon	110793815	110793903	.	-	.	transcript_id "STRG.22901.5"; gene_id "STRG.22901"; exon_number "2";
+5	StringTie	exon	110794193	110794243	.	-	.	transcript_id "STRG.22901.5"; gene_id "STRG.22901"; exon_number "3";
+5	StringTie	exon	110794585	110794805	.	-	.	transcript_id "STRG.22901.5"; gene_id "STRG.22901"; exon_number "4";
+5	StringTie	exon	110795732	110796066	.	-	.	transcript_id "STRG.22901.5"; gene_id "STRG.22901"; exon_number "5";
+5	StringTie	transcript	110793601	110795834	.	-	.	transcript_id "STRG.22901.4"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; ref_gene_id "ENSMUSG00000029512"; cmp_ref "ENSMUST00000198470"; class_code "="; tss_id "TSS22927";
+5	StringTie	exon	110793601	110793903	.	-	.	transcript_id "STRG.22901.4"; gene_id "STRG.22901"; exon_number "1";
+5	StringTie	exon	110794193	110794243	.	-	.	transcript_id "STRG.22901.4"; gene_id "STRG.22901"; exon_number "2";
+5	StringTie	exon	110794585	110794667	.	-	.	transcript_id "STRG.22901.4"; gene_id "STRG.22901"; exon_number "3";
+5	StringTie	exon	110794747	110794805	.	-	.	transcript_id "STRG.22901.4"; gene_id "STRG.22901"; exon_number "4";
+5	StringTie	exon	110795732	110795834	.	-	.	transcript_id "STRG.22901.4"; gene_id "STRG.22901"; exon_number "5";
+5	StringTie	transcript	110829070	110839777	.	-	.	transcript_id "STRG.22905.1"; gene_id "STRG.22905"; gene_name "Hscb"; xloc "XLOC_009425"; ref_gene_id "ENSMUSG00000043510"; cmp_ref "ENSMUST00000056937"; class_code "="; tss_id "TSS22928"; p_id "P12162";
+5	StringTie	exon	110829070	110829211	.	-	.	transcript_id "STRG.22905.1"; gene_id "STRG.22905"; exon_number "1";
+5	StringTie	exon	110830936	110830983	.	-	.	transcript_id "STRG.22905.1"; gene_id "STRG.22905"; exon_number "2";
+5	StringTie	exon	110834655	110834799	.	-	.	transcript_id "STRG.22905.1"; gene_id "STRG.22905"; exon_number "3";
+5	StringTie	exon	110835980	110836069	.	-	.	transcript_id "STRG.22905.1"; gene_id "STRG.22905"; exon_number "4";
+5	StringTie	exon	110836307	110836403	.	-	.	transcript_id "STRG.22905.1"; gene_id "STRG.22905"; exon_number "5";
+5	StringTie	exon	110839496	110839777	.	-	.	transcript_id "STRG.22905.1"; gene_id "STRG.22905"; exon_number "6";
+5	StringTie	transcript	110829080	110836320	.	-	.	transcript_id "STRG.22905.3"; gene_id "STRG.22905"; gene_name "Hscb"; xloc "XLOC_009425"; ref_gene_id "ENSMUSG00000043510"; cmp_ref "ENSMUST00000144850"; class_code "="; tss_id "TSS22929"; p_id "P12163";
+5	StringTie	exon	110829080	110829211	.	-	.	transcript_id "STRG.22905.3"; gene_id "STRG.22905"; exon_number "1";
+5	StringTie	exon	110830936	110830983	.	-	.	transcript_id "STRG.22905.3"; gene_id "STRG.22905"; exon_number "2";
+5	StringTie	exon	110834655	110834799	.	-	.	transcript_id "STRG.22905.3"; gene_id "STRG.22905"; exon_number "3";
+5	StringTie	exon	110835975	110836069	.	-	.	transcript_id "STRG.22905.3"; gene_id "STRG.22905"; exon_number "4";
+5	StringTie	exon	110836307	110836320	.	-	.	transcript_id "STRG.22905.3"; gene_id "STRG.22905"; exon_number "5";
+5	StringTie	transcript	110829080	110839575	.	-	.	transcript_id "STRG.22905.2"; gene_id "STRG.22905"; gene_name "Hscb"; xloc "XLOC_009425"; ref_gene_id "ENSMUSG00000043510"; cmp_ref "ENSMUST00000145318"; class_code "="; tss_id "TSS22930"; p_id "P12164";
+5	StringTie	exon	110829080	110829211	.	-	.	transcript_id "STRG.22905.2"; gene_id "STRG.22905"; exon_number "1";
+5	StringTie	exon	110830936	110830983	.	-	.	transcript_id "STRG.22905.2"; gene_id "STRG.22905"; exon_number "2";
+5	StringTie	exon	110835975	110836069	.	-	.	transcript_id "STRG.22905.2"; gene_id "STRG.22905"; exon_number "3";
+5	StringTie	exon	110836307	110836403	.	-	.	transcript_id "STRG.22905.2"; gene_id "STRG.22905"; exon_number "4";
+5	StringTie	exon	110839496	110839575	.	-	.	transcript_id "STRG.22905.2"; gene_id "STRG.22905"; exon_number "5";
+5	StringTie	transcript	110829081	110834895	.	-	.	transcript_id "STRG.22905.4"; gene_id "STRG.22905"; gene_name "Hscb"; xloc "XLOC_009425"; ref_gene_id "ENSMUSG00000043510"; cmp_ref "ENSMUST00000122921"; class_code "="; tss_id "TSS22931";
+5	StringTie	exon	110829081	110829211	.	-	.	transcript_id "STRG.22905.4"; gene_id "STRG.22905"; exon_number "1";
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+5	StringTie	exon	110834655	110834895	.	-	.	transcript_id "STRG.22905.4"; gene_id "STRG.22905"; exon_number "3";
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+5	StringTie	exon	113015367	113015514	.	-	.	transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "21";
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+12	StringTie	exon	69228097	69228169	.	-	.	transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "18";
+12	StringTie	transcript	69201779	69228190	.	-	.	transcript_id "STRG.52021.1"; gene_id "STRG.52021"; gene_name "Pole2"; xloc "XLOC_002837"; ref_gene_id "ENSMUSG00000020974"; cmp_ref "ENSMUST00000021359"; class_code "="; tss_id "TSS6896"; p_id "P3723";
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+12	StringTie	exon	69202907	69202974	.	-	.	transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "2";
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