view test-data/gffcompare_output.bed @ 0:7e572e148175 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/gffcompare_to_bed commit 321b217382f6be33bd77c7dbb51c8caf5fa50afe
author galaxyp
date Thu, 11 Jan 2018 11:16:51 -0500
parents
children
line wrap: on
line source

1	43776566	43778980	STRG.1163.2_i	0	-	43776566	43778980	100,100,100	3	1094,244,100	0,1948,2314
1	43776566	43778980	STRG.1163.1_i	0	-	43776566	43778980	100,100,100	3	1155,122,100	0,1887,2314
1	45331686	45332998	STRG.1209.1_c	0	+	45331686	45332998	100,100,100	4	90,54,108,34	0,286,448,1278
1	6453836	6460700	STRG.88.1_u	0	+	6453836	6460700	100,100,100	2	50,156	0,6708
1	86703818	87050095	STRG.2299.1	0	+	86703818	87050095	100,100,100	22	53,148,158,54,102,42,229,101,248,174,80,113,108,234,80,184,87,148,131,105,102,473	0,40862,41522,50408,56469,87597,117403,150541,153308,174584,226935,255924,269581,286273,317219,340198,341011,343218,343629,343869,345014,345804
1	86703827	86882439	STRG.2299.5	0	+	86703827	86882439	100,100,100	11	44,148,158,54,102,42,78,229,101,248,4037	0,40853,41513,50399,56460,87588,108684,117394,150532,153299,174575
1	86703827	87049195	STRG.2299.3	0	+	86703827	87049195	100,100,100	21	44,148,158,54,102,78,229,101,248,174,80,113,108,234,80,184,87,148,131,105,363	0,40853,41513,50399,56460,108684,117394,150532,153299,174575,226926,255915,269572,286264,317210,340189,341002,343209,343620,343860,345005
1	86703842	87050092	STRG.2299.4_j	0	+	86703842	87050092	100,100,100	21	29,148,158,54,102,78,229,101,248,174,80,113,234,80,184,87,148,131,105,102,470	0,40838,41498,50384,56445,108669,117379,150517,153284,174560,226911,255900,286249,317195,340174,340987,343194,343605,343845,344990,345780
1	86703842	87050092	STRG.2299.2	0	+	86703842	87050092	100,100,100	21	29,148,158,54,102,229,101,248,174,80,113,108,234,80,184,87,148,131,105,102,470	0,40838,41498,50384,56445,117379,150517,153284,174560,226911,255900,269557,286249,317195,340174,340987,343194,343605,343845,344990,345780
1	86754158	86767638	STRG.2299.6_j	0	+	86754158	86767638	100,100,100	3	122,102,509	0,6129,12971
1	9941958	9944118	STRG.229.1	0	-	9941958	9944118	100,100,100	4	197,69,108,99	0,364,651,2061
1	9942022	9943223	STRG.229.5	0	-	9942022	9943223	100,100,100	3	133,69,614	0,300,587
1	9942024	9942897	STRG.229.7	0	-	9942024	9942897	100,100,100	2	367,288	0,585
1	9942024	9944103	STRG.229.6_j	0	-	9942024	9944103	100,100,100	3	131,395,84	0,298,1995
1	9942024	9944103	STRG.229.4	0	-	9942024	9944103	100,100,100	3	367,108,84	0,585,1995
1	9942024	9944103	STRG.229.3_j	0	-	9942024	9944103	100,100,100	4	131,62,108,84	0,298,585,1995
1	9942024	9944117	STRG.229.2	0	-	9942024	9944117	100,100,100	4	125,69,108,98	0,298,585,1995
1	86908792	86909683	STRG.2297.1_i	0	-	86908792	86909683	100,100,100	2	319,285	0,606
1	193145390	193173087	STRG.5202.1_j	0	+	193145390	193173087	100,100,100	8	42,177,205,129,159,393,119,3806	0,11825,16222,17211,20375,22048,23126,23891
1	193156668	193164181	STRG.5202.2	0	+	193156668	193164181	100,100,100	3	724,205,1580	0,4944,5933
1	193167974	193173087	STRG.5202.3_j	0	+	193167974	193173087	100,100,100	3	157,119,3806	0,542,1307
1	193168502	193169489	STRG.5202.4	0	+	193168502	193169489	100,100,100	2	133,208	0,779
2	119749138	119749844	STRG.8811.1_j	0	+	119749138	119749844	100,100,100	3	148,217,172	0,223,534
2	119972463	120018974	STRG.8821.1_j	0	+	119972463	120018974	100,100,100	19	17,223,92,63,58,171,138,183,161,190,147,176,92,126,71,122,76,112,53	0,482,26018,38279,38538,39469,40129,40448,41155,42159,42879,43229,44316,44676,45117,45292,45835,46024,46458
2	120011686	120013094	STRG.8821.3	0	+	120011686	120013094	100,100,100	3	417,138,183	0,906,1225
2	120013042	120015605	STRG.8821.2	0	+	120013042	120015605	100,100,100	4	52,161,190,263	0,576,1580,2300
2	121008402	121016904	STRG.8871.1	0	+	121008402	121016904	100,100,100	11	207,60,80,82,97,74,77,278,61,47,506	0,315,640,1424,3031,3280,3950,4296,5555,7728,7996
2	121008431	121015120	STRG.8871.3	0	+	121008431	121015120	100,100,100	10	178,60,80,82,97,74,77,278,61,608	0,286,611,1395,3002,3251,3921,4267,5526,6081
2	121008447	121016904	STRG.8871.2	0	+	121008447	121016904	100,100,100	10	330,80,82,97,74,77,278,61,47,506	0,595,1379,2986,3235,3905,4251,5510,7683,7951
2	121008466	121011756	STRG.8871.5_j	0	+	121008466	121011756	100,100,100	4	311,80,1704,74	0,576,1360,3216
2	121008466	121012948	STRG.8871.4	0	+	121008466	121012948	100,100,100	8	143,60,80,82,125,74,77,250	0,251,576,1360,2967,3216,3886,4232
2	121008703	121010577	STRG.8871.6	0	+	121008703	121010577	100,100,100	3	74,80,751	0,339,1123
2	121011054	121011756	STRG.8871.7	0	+	121011054	121011756	100,100,100	2	476,74	0,628
2	120089174	120154606	STRG.8831.1	0	-	120089174	120154606	100,100,100	6	2510,165,413,98,177,367	0,7788,12845,38417,47724,65065
2	121194837	121221232	STRG.8881.3_j	0	-	121194837	121221232	100,100,100	12	3770,146,200,95,2006,192,431,150,272,153,505,75	0,4138,4769,5465,7705,10082,12861,13517,14243,16432,20829,26320
2	121199638	121204981	STRG.8881.7	0	-	121199638	121204981	100,100,100	5	168,95,210,216,62	0,664,2904,4694,5281
2	121199638	121221232	STRG.8881.4_c	0	-	121199638	121221232	100,100,100	11	168,95,216,216,192,431,150,272,153,505,75	0,664,2904,4694,5281,8060,8716,9442,11631,16028,21519
2	121205080	121208574	STRG.8881.11	0	-	121205080	121208574	100,100,100	3	31,431,220	0,2618,3274
2	121208844	121221232	STRG.8881.9	0	-	121208844	121221232	100,100,100	4	508,153,505,75	0,2425,6822,12313
2	121215888	121221379	STRG.8881.14	0	-	121215888	121221379	100,100,100	2	283,222	0,5269
2	121216142	121247714	STRG.8881.5_j	0	-	121216142	121247714	100,100,100	7	29,93,58,1063,1297,203,214	0,5015,7562,11502,19430,27751,31358
2	121216142	121270286	STRG.8881.2_c	0	-	121216142	121270286	100,100,100	15	29,93,58,204,120,1297,203,95,127,167,130,159,125,85,68	0,5015,7562,11502,12445,19430,27751,31358,32021,35725,37459,40379,43001,53761,54076
2	121216142	121271321	STRG.8881.1	0	-	121216142	121271321	100,100,100	16	29,93,58,204,1297,203,95,127,167,130,159,125,85,91,185,50	0,5015,7562,11502,19430,27751,31358,32021,35725,37459,40379,43001,53761,54076,54381,55129
2	121228368	121235689	STRG.8881.13	0	-	121228368	121235689	100,100,100	2	339,117	0,7204
2	121256513	121271369	STRG.8881.6	0	-	121256513	121271369	100,100,100	6	167,125,85,91,185,98	0,2630,13390,13705,14010,14758
2	121258885	121270286	STRG.8881.10	0	-	121258885	121270286	100,100,100	3	383,85,68	0,11018,11333
2	121267311	121271361	STRG.8881.8	0	-	121267311	121271361	100,100,100	4	2677,91,185,90	0,2907,3212,3960
2	121269629	121271370	STRG.8881.12	0	-	121269629	121271370	100,100,100	3	359,185,99	0,894,1642
3	57736061	57835231	STRG.12098.3	0	+	57736061	57835231	100,100,100	10	139,126,81,126,88,91,106,94,81,1746	0,28195,32978,43321,60136,66385,70960,84445,96902,97424
3	57736081	57833888	STRG.12098.6	0	+	57736081	57833888	100,100,100	2	119,316	0,97491
3	57736081	57835233	STRG.12098.2	0	+	57736081	57835233	100,100,100	10	119,126,81,126,88,91,106,94,81,1661	0,28175,32958,43301,60116,66365,70940,84425,96882,97491
3	57736112	57835119	STRG.12098.1	0	+	57736112	57835119	100,100,100	10	88,126,81,126,88,820,106,94,81,1634	0,28144,32927,43270,60085,65605,70909,84394,96851,97373
3	57736119	57820993	STRG.12098.5_j	0	+	57736119	57820993	100,100,100	9	81,144,126,81,126,88,91,106,487	0,11771,28137,32920,43263,60078,66327,70902,84387
3	57736119	57833232	STRG.12098.4	0	+	57736119	57833232	100,100,100	9	81,126,81,126,88,91,106,94,269	0,28137,32920,43263,60078,66327,70902,84387,96844
3	57644348	57651715	STRG.12092.1	0	-	57644348	57651715	100,100,100	5	2528,174,83,78,129	0,5693,6342,7073,7238
3	57651101	57651715	STRG.12092.2	0	-	57651101	57651715	100,100,100	2	398,129	0,485
5	110839982	110874133	STRG.22906.2	0	+	110839982	110874133	100,100,100	14	66,338,125,148,109,54,62,100,87,164,116,86,81,654	0,1223,8406,8647,15742,18391,20880,23275,25539,26280,26955,28025,32044,33497
5	110839999	110874145	STRG.22906.1	0	+	110839999	110874145	100,100,100	15	49,338,125,148,91,109,54,62,100,87,164,116,86,81,666	0,1206,8389,8630,9596,15725,18374,20863,23258,25522,26263,26938,28008,32027,33480
5	110840253	110874013	STRG.22906.3_j	0	+	110840253	110874013	100,100,100	13	1290,125,148,91,109,54,62,100,87,164,116,86,1987	0,8135,8376,9342,15471,18120,20609,23004,25268,26009,26684,27754,31773
5	110855689	110868215	STRG.22906.4_j	0	+	110855689	110868215	100,100,100	6	144,54,62,100,87,208	0,2684,5173,7568,9832,12318
5	110866270	110866720	STRG.22906.5	0	+	110866270	110866720	100,100,100	2	156,185	0,265
5	110892838	111085034	STRG.22909.1_c	0	+	110892838	111085034	100,100,100	2	272,13	0,192183
5	111100697	111102068	STRG.22913.1_c	0	+	111100697	111102068	100,100,100	2	269,99	0,1272
5	111225457	111229415	STRG.22916.1	0	+	111225457	111229415	100,100,100	2	624,68	0,3890
5	111231100	111235600	STRG.22917.1_c	0	+	111231100	111235600	100,100,100	3	79,219,125	0,2145,4375
5	111330762	111388359	STRG.22924.1	0	+	111330762	111388359	100,100,100	12	71,31,146,92,8,75,84,78,111,123,85,1857	0,4732,7520,15720,16357,17018,18728,40549,49429,52225,54757,55740
5	111330806	111388359	STRG.22924.2	0	+	111330806	111388359	100,100,100	11	27,31,146,92,8,75,84,78,111,123,1857	0,4688,7476,15676,16313,16974,18684,40505,49385,52181,55696
5	111380168	111383703	STRG.22924.3	0	+	111380168	111383703	100,100,100	2	134,716	0,2819
5	111417441	111454864	STRG.22929.1_j	0	+	111417441	111454864	100,100,100	3	320,2274,249	0,2168,37174
5	111417441	111457033	STRG.22929.2	0	+	111417441	111457033	100,100,100	2	4442,2418	0,37174
5	111546620	111566751	STRG.22958.1_u	0	+	111546620	111566751	100,100,100	4	167,77,2000,786	0,7231,15766,19345
5	111553369	111564411	STRG.22958.2_u	0	+	111553369	111564411	100,100,100	3	559,1223,249	0,9017,10793
5	111553369	111567041	STRG.22958.3_u	0	+	111553369	111567041	100,100,100	3	559,2000,2005	0,9017,11667
5	111581567	111582873	STRG.22963.1	0	+	111581567	111582873	100,100,100	2	303,453	0,853
5	112276690	112315361	STRG.22971.1	0	+	112276690	112315361	100,100,100	7	81,72,912,199,51,49,471	0,27209,30875,32998,34993,36551,38200
5	112276703	112309032	STRG.22971.3	0	+	112276703	112309032	100,100,100	3	68,72,1467	0,27196,30862
5	112276706	112315355	STRG.22971.2	0	+	112276706	112315355	100,100,100	6	65,912,199,51,49,465	0,30859,32982,34977,36535,38184
5	112308290	112309812	STRG.22971.5	0	+	112308290	112309812	100,100,100	2	264,124	0,1398
5	112312893	112314964	STRG.22971.4	0	+	112312893	112314964	100,100,100	2	397,74	0,1997
5	112326357	112338073	STRG.22973.1	0	+	112326357	112338073	100,100,100	14	116,186,221,154,157,128,153,528,107,169,244,143,166,1088	0,1127,1604,3008,3389,4733,5510,6606,7217,7959,8502,9215,9657,10628
5	112335641	112337273	STRG.22973.2	0	+	112335641	112337273	100,100,100	2	539,288	0,1344
5	112343082	112378414	STRG.22978.2	0	+	112343082	112378414	100,100,100	14	81,1005,91,144,108,117,95,73,37,97,799,133,109,456	0,961,3511,6202,20026,20463,21438,23816,25853,26372,26863,31797,32270,34876
5	112343092	112344747	STRG.22978.3	0	+	112343092	112344747	100,100,100	2	30,704	0,951
5	112343094	112378414	STRG.22978.1	0	+	112343094	112378414	100,100,100	14	69,508,91,144,108,117,95,73,37,97,799,133,109,456	0,1446,3499,6190,20014,20451,21426,23804,25841,26360,26851,31785,32258,34864
5	112343098	112344747	STRG.22978.6_c	0	+	112343098	112344747	100,100,100	2	24,207	0,1442
5	112368744	112369774	STRG.22978.5	0	+	112368744	112369774	100,100,100	2	228,320	0,710
5	112375334	112378401	STRG.22978.4	0	+	112375334	112378401	100,100,100	2	127,443	0,2624
5	112793299	112795691	STRG.22983.1	0	+	112793299	112795691	100,100,100	2	312,277	0,2115
5	110784487	110810097	STRG.22901.1	0	-	110784487	110810097	100,100,100	28	1740,136,158,119,173,191,144,110,194,269,87,146,126,90,61,148,89,51,83,59,102,74,174,37,33,42,93,484	0,1812,2596,3086,3285,3622,4241,4460,4854,5724,6362,6564,7113,7614,7909,8478,9327,9705,10097,10259,11244,11668,11839,14394,14636,24517,24639,25126
5	110786038	110787221	STRG.22901.9	0	-	110786038	110787221	100,100,100	2	397,138	0,1045
5	110786093	110796066	STRG.22901.3_j	0	-	110786093	110796066	100,100,100	20	134,136,158,119,173,191,144,588,269,87,146,126,90,61,148,89,51,83,59,335	0,206,990,1480,1679,2016,2635,2854,4118,4756,4958,5507,6008,6303,6872,7721,8099,8491,8653,9638
5	110786093	110810053	STRG.22901.2	0	-	110786093	110810053	100,100,100	28	134,136,158,119,173,191,144,110,194,269,105,146,126,90,61,148,89,51,83,59,102,74,174,37,33,42,93,440	0,206,990,1480,1679,2016,2635,2854,3248,4118,4756,4958,5507,6008,6303,6872,7721,8099,8491,8653,9638,10062,10233,12788,13030,22911,23033,23520
5	110787890	110788667	STRG.22901.7	0	-	110787890	110788667	100,100,100	2	55,558	0,219
5	110791397	110792192	STRG.22901.8	0	-	110791397	110792192	100,100,100	2	329,91	0,704
5	110791672	110793405	STRG.22901.6	0	-	110791672	110793405	100,100,100	4	54,90,61,440	0,429,724,1293
5	110792544	110796066	STRG.22901.5_j	0	-	110792544	110796066	100,100,100	5	569,89,51,221,335	0,1270,1648,2040,3187
5	110793600	110795834	STRG.22901.4	0	-	110793600	110795834	100,100,100	5	303,51,83,59,103	0,592,984,1146,2131
5	110829069	110839777	STRG.22905.1	0	-	110829069	110839777	100,100,100	6	142,48,145,90,97,282	0,1866,5585,6910,7237,10426
5	110829079	110836320	STRG.22905.3	0	-	110829079	110836320	100,100,100	5	132,48,145,95,14	0,1856,5575,6895,7227
5	110829079	110839575	STRG.22905.2	0	-	110829079	110839575	100,100,100	5	132,48,95,97,80	0,1856,6895,7227,10416
5	110829080	110834895	STRG.22905.4	0	-	110829080	110834895	100,100,100	3	131,48,241	0,1855,5574
5	112337391	112340022	STRG.22974.4	0	-	112337391	112340022	100,100,100	5	350,46,250,99,126	0,610,926,2327,2505
5	112337391	112343020	STRG.22974.2	0	-	112337391	112343020	100,100,100	7	350,46,155,99,227,41,146	0,610,926,2327,2505,3704,5483
5	112337391	112343040	STRG.22974.1	0	-	112337391	112343040	100,100,100	7	350,72,155,99,227,41,166	0,584,926,2327,2505,3704,5483
5	112337908	112339932	STRG.22974.5	0	-	112337908	112339932	100,100,100	3	564,99,36	0,1810,1988
5	112337971	112343018	STRG.22974.3	0	-	112337971	112343018	100,100,100	6	76,250,99,227,41,144	0,346,1747,1925,3124,4903
5	112339718	112340219	STRG.22974.6	0	-	112339718	112340219	100,100,100	2	99,323	0,178
5	112419351	112425650	STRG.22982.1_c	0	-	112419351	112425650	100,100,100	3	2687,103,37	0,5271,6262
5	112688877	112765931	STRG.22984.3	0	-	112688877	112765931	100,100,100	11	220,1240,138,45,131,186,138,84,117,114,97	0,3218,26503,28109,34929,68577,71438,72446,73779,75570,76957
5	112688917	112871586	STRG.22984.1_c	0	-	112688917	112871586	100,100,100	38	180,1240,138,45,131,186,138,84,117,114,153,105,111,201,124,155,125,109,120,90,144,129,66,110,220,184,160,151,81,193,91,174,145,64,101,143,199,166	0,3178,26463,28069,34889,68537,71398,72406,73739,75530,86335,93667,96639,101072,102159,106477,109899,113448,114271,120744,122668,123068,128712,139059,141242,142153,145457,148833,150699,151702,154286,157353,169484,176322,176739,177426,179276,182503
5	112772885	112871586	STRG.22984.2	0	-	112772885	112871586	100,100,100	29	1641,388,105,111,201,124,155,125,109,120,90,144,129,66,110,220,184,160,151,81,193,91,174,145,64,101,143,199,166	0,2132,9699,12671,17104,18191,22509,25931,29480,30303,36776,38700,39100,44744,55091,57274,58185,61489,64865,66731,67734,70318,73385,85516,92354,92771,93458,95308,98535
5	112871741	112874253	STRG.22984.5_j	0	-	112871741	112874253	100,100,100	3	755,67,361	0,1753,2151
5	112875222	112896379	STRG.22984.4_j	0	-	112875222	112896379	100,100,100	3	104,159,124	0,2762,21033
5	112879419	112896379	STRG.22984.6_c	0	-	112879419	112896379	100,100,100	2	159,124	0,16836
5	112910481	113015514	STRG.22985.1	0	-	112910481	113015514	100,100,100	21	4593,114,137,163,96,67,101,67,108,95,131,79,100,92,52,62,75,102,74,77,148	0,5568,8344,9526,13467,14914,18174,19191,27227,31151,34436,36105,43344,44682,46833,51105,56430,58686,63025,75283,104885
5	112912598	113015514	STRG.22985.2	0	-	112912598	113015514	100,100,100	21	2476,114,137,163,96,67,101,67,108,95,131,79,100,92,52,62,75,141,74,77,148	0,3451,6227,7409,11350,12797,16057,17074,25110,29034,32319,33988,41227,42565,44716,48988,54313,56569,60908,73166,102768
5	112916109	112924375	STRG.22985.4	0	-	112916109	112924375	100,100,100	4	54,137,163,427	0,2716,3898,7839
5	112920061	112925798	STRG.22985.5	0	-	112920061	112925798	100,100,100	3	109,96,554	0,3887,5183
5	112960543	113015503	STRG.22985.3	0	-	112960543	113015503	100,100,100	6	1105,75,102,74,77,137	0,6368,8624,12963,25221,54823
5	113086322	113163351	STRG.22991.1	0	-	113086322	113163351	100,100,100	8	4702,83,143,119,175,241,119,294	0,6092,6779,7643,9267,11275,15136,76735
5	113184127	113192079	STRG.22997.1_u	0	-	113184127	113192079	100,100,100	3	590,88,1476	0,4158,6476
12	69229664	69231901	STRG.52020.2_u	0	+	69229664	69231901	100,100,100	2	62,203	0,2034
12	69199878	69228169	STRG.52021.2_j	0	-	69199878	69228169	100,100,100	18	2004,68,177,109,78,60,55,683,73,49,57,84,75,94,78,76,101,73	0,3028,4212,6531,7980,8142,9038,9433,11494,12344,13108,13950,15432,22098,22520,23225,26459,28218
12	69201778	69228190	STRG.52021.1	0	-	69201778	69228190	100,100,100	19	104,68,177,109,78,60,55,90,173,73,49,57,84,75,94,78,76,101,94	0,1128,2312,4631,6080,6242,7138,7533,8043,9594,10444,11208,12050,13532,20198,20620,21325,24559,26318