Mercurial > repos > galaxyp > hardklor

diff hardklor.py @ 6:73fc27617b2e draft default tip

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/hardklor commit 44c3e37a12f60b01521d3e3f18b7f16664f954cc"
author galaxyp
date Tue, 07 Apr 2020 03:27:32 -0400
parents d796e6613d19
children
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line diff
--- a/hardklor.py	Sat Aug 19 08:00:25 2017 -0400
+++ b/hardklor.py	Tue Apr 07 03:27:32 2020 -0400
@@ -10,10 +10,10 @@
 
 CONFIG_FILE = 'hk.conf'
 extension_lookup = {
-    'mzml'  :   'mzML',
-    'mzxml' :   'mzXML',
-    'ms1'   :   'MS1',
-    }
+    'mzml': 'mzML',
+    'mzxml': 'mzXML',
+    'ms1': 'MS1',
+}
 
 # input:
 ms1_ext = sys.argv[1]
@@ -33,7 +33,7 @@
     ms1_ext = extension_lookup[ms1_ext]
     linkname = 'ms1_dsetlink.{0}'.format(ms1_ext)
     os.symlink(ms1_file, linkname)
-    ms1_file = linkname 
+    ms1_file = linkname
 
 # load template and dump to config file
 with open(config_load) as fp:
@@ -53,7 +53,7 @@
     maxfeat=options['maxfeat'],
     inputfile=ms1_file,
     outputfile=output_file,
-    )
+)
 with open(CONFIG_FILE, 'w') as fp:
     fp.write(config_to_dump)