Mercurial > repos > galaxyp > hardklor

diff kronik.xml @ 6:73fc27617b2e draft default tip

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/hardklor commit 44c3e37a12f60b01521d3e3f18b7f16664f954cc"
author galaxyp
date Tue, 07 Apr 2020 03:27:32 -0400
parents 539f157784e7
children
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--- a/kronik.xml	Sat Aug 19 08:00:25 2017 -0400
+++ b/kronik.xml	Tue Apr 07 03:27:32 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="kronik" name="Kronik" version="2.20">
+<tool id="kronik" name="Kronik" version="2.20+galaxy1">
     <description>processes Hardklor features to find peptides by chromatographic profiling</description>
     <requirements>
         <requirement type="package" version="2.20">kronik</requirement>
@@ -6,7 +6,7 @@
     <stdio>
         <exit_code range="1:" level="fatal" description="Error occurred while running Kronik"/>
     </stdio>
-    <command>kronik -c $c -d $d -g $g -m $m -n $n -p $p "$inputfile" "$output"</command>
+    <command>kronik -c $c -d $d -g $g -m $m -n $n -p $p '$inputfile' '$output'</command>
     <inputs>
         <param name="inputfile" type="data" format="hardklor" label="Hardklör isotope distributions" />
         <param name="c" type="integer" value="5" label="Contaminant threshold in minutes" help="Peptides persisting for longer than this value are excluded" />